Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01308 ATGGAGGTTGCTACCGCAGGCACCAGCGTTTCGCTCAACGCGCGCATTTCAGCTTCTGGAGCCTCTTCTCAAACTGTTATTTCTAACCGGAATTGGAAATCGTCATCCTCTTGTTTCAAAGCGACGTCGCTTTCCACCAGCTTCCTTTCTTCCTTCGCCGGAGGAAGCATTTCGGGAGAATTTTCGGGGGTAAAATTACAGCCGTCCTCTCTTAATCCAGCTTTTTTTCGTGGCTCTAAGGGAAAGCGAGGCGTTGTTACTATGGTTATTCCTTTTTCAAAGGGAAGTGCATGGGAGCAACCTCCTCCAAATTTGGCATCTTACTTATATAAGAATCGAATTGTTTACTTGGGGATGTCACTTGTTCCGTCCGTCACTGAATTAATACTTGCAGAGTTTCTTTACCTTCAATACGAAGACGAGGAGAAACCTATCTACCTATACATAAACTCGACTGGGACAACGAAGGGTGGTGAGAAGTTGGGCTACGAAACGGAGGCTTTTGCAATTTATGATGTTATGAGGTATGTGAAACCACCGATATTCACCTTATGTGTTGGTAATGCTTGGGGAGAAGCTGCCCTGCTTTTGGCTGCTGGTGCAAAAGGAAATCGTGCTGCTTTACCCTCATCAACAATCATGATAAAGCAGCCTATAGCCCGGTTTCAAGGTCAAGCAACTGATATTGAACTCGCGAGAAAGGAAGTGAGAAATGTGAAGACAGAATTGGTTAACCTATATGCAAAACATATCGGAAAGACACCGGAGGAAATCGAAGCTGACATCAGAAGACCAAAATATTTCAGTCCCAGTGAAGCAGTGGAGTATGGTATCATTGATAAGGTATTATACAATGAGAGGTCTAGCGAAGACCGGGGCGTAGTGGCTGACCTGAAGAAGGCACAGCTTTTGTAA 915 44.81 MEVATAGTSVSLNARISASGASSQTVISNRNWKSSSSCFKATSLSTSFLSSFAGGSISGEFSGVKLQPSSLNPAFFRGSKGKRGVVTMVIPFSKGSAWEQPPPNLASYLYKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKPPIFTLCVGNAWGEAALLLAAGAKGNRAALPSSTIMIKQPIARFQGQATDIELARKEVRNVKTELVNLYAKHIGKTPEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERSSEDRGVVADLKKAQLL 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43745786 43748697 + Bda023162.1 Bda06g01308 8890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01308 304 PRINTS Clp protease catalytic subunit P signature 104 119 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bda06g01308 304 PRINTS Clp protease catalytic subunit P signature 261 280 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bda06g01308 304 PRINTS Clp protease catalytic subunit P signature 183 200 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bda06g01308 304 PRINTS Clp protease catalytic subunit P signature 204 223 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bda06g01308 304 PRINTS Clp protease catalytic subunit P signature 144 164 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bda06g01308 304 CDD S14_ClpP_2 104 282 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bda06g01308 304 Pfam Clp protease 105 284 IPR023562 -
Bda06g01308 304 Coils Coil 229 249 - -
Bda06g01308 304 Gene3D - 77 291 - -
Bda06g01308 304 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 29 303 IPR023562 -
Bda06g01308 304 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 29 303 - -
Bda06g01308 304 SUPERFAMILY ClpP/crotonase 99 286 IPR029045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01308 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - csv:101206230 479.174
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01308 Bda-Chr6:43745786 Bda08g00678 Bda-Chr8:7208744 3.65E-52 dispersed
Bda06g01308 Bda-Chr6:43745786 Bda12g00134 Bda-Chr12:1216705 2.07E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g499 . Blo03g00173 Bda06g01308 . . Bpe07g00160 . . Cmo06g00785 Cmo16g01108 . . . . . Cpe14g00877 . . . . . . . . Cla10g00284 Cam10g0295 Cec10g0302 Cco10g0298 Clacu10g0294 Cmu10g1133 Cre10g0541 . . . . Lsi07g01330 . . Cme06g02612 . . . . . . Bma05g00775 . . . . Cma06g00764 Cma16g01058 Car06g00683 Car16g01007 Cpe08g00753 . . . . . . . . . . . . . . . . Csa03g00303 Chy06g02019 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011816 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g01308 Bda_Chr06 FPKM 8.475065 3.764842 2.236977 5.271795 6.98697 4.626441 7.975863 1.630146 0.980719