Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00005 ATGAGGGTGAACGAAATGCACCCTCTGTGCTGTCTCTCTATAGAGAGTTTCGGAGGCGGAGGTAATTTTGGCGATAACTTGTCGGAAGAGGCGATGCTATCGAGGTCCAGGAGCATACCGGCGAGTTGTGCAGCTATGTCCGGCAGATCTAACGGCAATGCCGGAATGTTACACCCTGGATCTGCATCCACCGTAGCTGGAATTCTCTACAAGTGGACGAATTACGGGAAAGGTTGGAGATCCAGGTGGTTTTTATTGCGCGATGGCGTTCTCTCTTACGCTAAAATTCGCCGGCCAGAAAACCTAAACATCCTAACACCAAACGACGATATTAGGCTAATCGGAGAAGTTTCAACAAATCGGCTTTCGAGATTGGATGCCGGAGGTGGAAGAAGAAAGCATCAGAAGTCCATTGGAGTAGCACATCTTAAGATCTCCTCATTCCGAGAGAGCAAGTCTGATGATAGGCGGTTTTATATTTTTACTGCTACTAAGACTCTCCATTTGAGAACTGATTCAAAGAGGGATAGGGCAGCTTGGATGCAAGCTTTACACACCGCAAGAGGCCTATTTCCACCAAGAACGATAAATGATAACCTATCACTCGTCCCTAGAGCATTGTCTGTATCAACTAAGATGCTTAAGGAGAGATTACTTGAAGAGGGAATGAATGAGACTCTTGTAAAGGATTGTGAACAGATCATGCTTTCAGAATTCTCAGAAATTCGAGGTCAGCTTCAAGTTCTATGTGAGGAACGCTCTAACTTGATTGATACTATAAGGCAATTGGAGGCTGCCAACATTGAAGCTGAAGCAGTGGATATGCATGGTGGGGAATACCAATTGCCGAAGCATGATTTCTTAGCTGTGGAAGATCAAAAATATGGTGGAGTAGTTGCCAAATTTGAATGTAGCACCACTGACTCATCTGATGATATGGAGACAAAAGAGTTTGAGAATATGTCGGATGAAGATGAAATATCCTTTTATGACACAATGGAGAATTTTACTGAATCTAATGCTAGTTGTGGTTCTCTAAGAGCAGATTCATTTTGCATAGATGTAAGCAGGGAATTCGAAAGCAAATATGATAATGTTAGGAAGATGAAAAATGAGAGCTGCAATTCTGGGGACTTATGCAATGAAAGACGTCAAAGACTTCCTAGTCCGGTTGAAAAGGAGAAACGAGTCAGTCTTTGGTCTATAATCAAAGATAATGTAGGAAAGGATCTCACACGGGTTTGCCTCCCTGTTTATTTTAACGAGCCAATATCTTCCCTTCAGAAATGTTGTGAAGACTTGGAATATTCTTATCTTTTGGATCGAGCTTATGAACATGGAAAAATGGGTAATGGTCTCCTGAGGGCTCTCAATGTAGCTGCATTTGCGGTTTCAGGATATGCTTCCTCCGAGGGGCGCCACTGTAAACCTTTCAATCCCTTGCTGGGTGAAACTTACGAAGCTGACTACCCTGAGAAAGGAATTCGCTTCTTCTCTGAGAAGGTAAGTCACCATCCAACCCTCCTTGCTTGTCACTGTGAAGGTAGAGGATGGAAATTCTGGGGTGATAGCAATCTTCATTCAAAATTCTGGGGCAGGTCCATTCAGCTGGAACCAGTTGGAGTTCTAACTGTGGAGTTTGATGATGGAGAAATCTTCCAGTGGAGCAAGGTTACAACAAATATATACAATCTGATCCTTGGCAATGTCTATTGTGATCATCATGGTATAATGCACATAAGCGGCAACAAACAACATTCGTGCAAACTCACATTCAAAGAACAATCTATTCTAGACCGAAATCCTCACCAGGTTCATGGATATGTGGAAGATGTGACAGGGAAAAGGGTAGCAACACTATTAGGGAAATGGGATGACTGCATGTATTATGTCAATGGGGAAGGAGGAGGGTATTCGAAAGGCGGATTTAATTTATGCGATGCCTCATTGTTGTGGAAAAGTCATAAATCTCCACCAAATCTCACTCGTTATAACCTGTCTTCCTTTGCAATCACTCTAAACGAGCTAACAGGGGGACTGAAGGAAAGGCTCCCACCCACAGATTCTAGATTGCGACCAGACCAGCGGCATTTAGAAAACGGTGAATATGATAAAGCAAACGAGGAAAAACAGCGATTGGAGAAGAGGCAAAGAATTTCGAGGAAACTGCAAGAAAATGGCTGGAGGCCAAGGTGGTTCCAAAGAGAGAGAGAAGACGGACCATTCCGATATGTGGGCGGGTACTGGGAAGCTCGAGAAACAGGAAAATGGGAAGATTGCCCTGATATATTTGGAGAATTGAACGAGGAGCTTGTGACCAATTAG 2325 43.44 MRVNEMHPLCCLSIESFGGGGNFGDNLSEEAMLSRSRSIPASCAAMSGRSNGNAGMLHPGSASTVAGILYKWTNYGKGWRSRWFLLRDGVLSYAKIRRPENLNILTPNDDIRLIGEVSTNRLSRLDAGGGRRKHQKSIGVAHLKISSFRESKSDDRRFYIFTATKTLHLRTDSKRDRAAWMQALHTARGLFPPRTINDNLSLVPRALSVSTKMLKERLLEEGMNETLVKDCEQIMLSEFSEIRGQLQVLCEERSNLIDTIRQLEAANIEAEAVDMHGGEYQLPKHDFLAVEDQKYGGVVAKFECSTTDSSDDMETKEFENMSDEDEISFYDTMENFTESNASCGSLRADSFCIDVSREFESKYDNVRKMKNESCNSGDLCNERRQRLPSPVEKEKRVSLWSIIKDNVGKDLTRVCLPVYFNEPISSLQKCCEDLEYSYLLDRAYEHGKMGNGLLRALNVAAFAVSGYASSEGRHCKPFNPLLGETYEADYPEKGIRFFSEKVSHHPTLLACHCEGRGWKFWGDSNLHSKFWGRSIQLEPVGVLTVEFDDGEIFQWSKVTTNIYNLILGNVYCDHHGIMHISGNKQHSCKLTFKEQSILDRNPHQVHGYVEDVTGKRVATLLGKWDDCMYYVNGEGGGYSKGGFNLCDASLLWKSHKSPPNLTRYNLSSFAITLNELTGGLKERLPPTDSRLRPDQRHLENGEYDKANEEKQRLEKRQRISRKLQENGWRPRWFQREREDGPFRYVGGYWEARETGKWEDCPDIFGELNEELVTN 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 75375 80554 + Bda025050.1 Bda07g00005 8895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00005 774 Coils Coil 246 266 - -
Bda07g00005 774 Pfam Oxysterol-binding protein 398 753 IPR000648 GO:0008289
Bda07g00005 774 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 4 356 - -
Bda07g00005 774 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 364 768 IPR000648 GO:0008289
Bda07g00005 774 CDD PH_ORP_plant 65 197 - -
Bda07g00005 774 ProSiteProfiles PH domain profile. 62 189 IPR001849 -
Bda07g00005 774 Pfam Pleckstrin homology domain 67 186 - -
Bda07g00005 774 Coils Coil 696 726 - -
Bda07g00005 774 SMART PH_update 63 191 IPR001849 -
Bda07g00005 774 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 4 356 IPR000648 GO:0008289
Bda07g00005 774 Gene3D - 60 189 IPR011993 -
Bda07g00005 774 Gene3D - 484 654 - -
Bda07g00005 774 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 364 768 - -
Bda07g00005 774 MobiDBLite consensus disorder prediction 685 715 - -
Bda07g00005 774 SUPERFAMILY PH domain-like 50 199 - -
Bda07g00005 774 MobiDBLite consensus disorder prediction 682 715 - -
Bda07g00005 774 Gene3D - 695 758 - -
Bda07g00005 774 SUPERFAMILY Oxysterol-binding protein-like 393 768 IPR037239 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00005 K20456 OSBP; oxysterol-binding protein 1 - tcc:18606296 1161.75
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g00005 Bda08g00569 CCT
Bda06g00037 Bda07g00005 CCT
Bda07g00005 Bda09g00095 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00037 Bda-Chr6:329087 Bda07g00005 Bda-Chr7:75375 0 dispersed
Bda07g00005 Bda-Chr7:75375 Bda08g00569 Bda-Chr8:5788366 0 dispersed
Bda07g00005 Bda-Chr7:75375 Bda09g00095 Bda-Chr9:1824771 8.52E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g511 Blo02g01049 Blo03g00169 Bda06g00037 . Bpe05g00588 Bpe07g00165 . . Cmo06g00789 Cmo16g01114 . Cma15g01141 Car02g01307 Car15g01037 . Cpe14g00881 Cpe05g00242 Bhi11g00212 . . . . . . Cla10g00276 Cam10g0285 Cec10g0293 Cco10g0290 Clacu10g0286 Cmu10g1126 Cre10g0534 . . Cone6ag0690 Cone9ag0692 Lsi07g01319 . . Cme06g02601 . Blo19g00281 Bda07g00005 . . . Bma05g00770 . . . Cmo15g01200 Cma06g00769 Cma16g01066 Car06g00687 Car16g01012 Cpe08g00749 . Bhi12g00421 . . Lac11g2262 Hepe06g1148 . Lcy12g1808 . . . . . . . . Csa03g04675 . Cme09g01638
Vvi2g512 . . . Bda08g00569 . . Bma07g01601 Bma14g00510 . . . . Car02g01309 . . . . Bhi11g00211 Tan01g2012 . . . . . . . . . . . . . . . . . Csa05g00404 Chy09g01108 . Blo03g00415 . Bda07g00005 Bda09g00095 Bpe08g01434 Bpe11g00265 . . . . . . . . . . Cpe13g00226 Bhi12g00422 . . . . . . Cla01g00377 Cam01g0396 Cec01g0388 Cco01g0408 Clacu01g0397 Cmu01g0378 Cre09g2134 Lsi09g00408 . Chy06g02027 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000881 4 7 4 5 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 3 4 2 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00005 Bda_Chr07 FPKM 0.0 0.0 0.0 0.0 0.117083 0.582184 0.0 0.128924 0.062045