Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00013 ATGGCCGGTAAAGCCAGAGGTTTCAGGCTGCGACACAGGCTACGAAAGGTCTTCTTCAAATGGTGGAACTGCGGATCAAAAAGGAGAAAAAATACCAAGTACATCAAACTAAACTCTCCAATGACCGGAAATTCGCACCCGATTTCTAGGTTCTTCACCTTCATACGGTCTCTCCGGCGTGGAGCGAAGCTATTTTGTTTAACAAAATCCGGCTATATTCTGGTCTCTAATGATCATGACACCATCCAGTATCCAAACCCGATCAAGCCACGAAAGGGATACCTAAAAGTTTACGTCGGCGATTCAGAAGTGGCAGTGAAGACGTATTTAGTGTCTGTGACTTACTTCAACCATCCATTATTTAGGGAGGTGCTGAAGGAGGCCGAGAGAGTAAACGGATTCAACCACCCAGGCGGGATCACAATTCCTTGTGAAGTTTCGGAGTTTGAGAAGCTAAACAAGAGAATTGCCTCGTCCCAAAGTAGCCGCCGTCGTTGGTGGAATCGTTACCGCGATCGGCAACTCCGAAAGCAAGAATAA 540 46.67 MAGKARGFRLRHRLRKVFFKWWNCGSKRRKNTKYIKLNSPMTGNSHPISRFFTFIRSLRRGAKLFCLTKSGYILVSNDHDTIQYPNPIKPRKGYLKVYVGDSEVAVKTYLVSVTYFNHPLFREVLKEAERVNGFNHPGGITIPCEVSEFEKLNKRIASSQSSRRRWWNRYRDRQLRKQE 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 244859 245398 + Bda025064.1 Bda07g00013 8903

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00013 179 Pfam Auxin responsive protein 89 153 IPR003676 GO:0009733
Bda07g00013 179 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 5 165 IPR003676 GO:0009733
Bda07g00013 179 PANTHER AUXIN-RESPONSIVE PROTEIN-LIKE 5 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00013 K14488 SAUR; SAUR family protein - fve:101292210 137.502
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g00013 Bda08g00563 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00013 Bda-Chr7:244859 Bda08g00563 Bda-Chr8:5714847 1.98E-47 dispersed
Bda07g00013 Bda-Chr7:244859 Bda13g00309 Bda-Chr13:3928736 2.63E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g490 . . . Bda08g00563 Bpe05g00593 . . . . . . . . . . . . . . . . . . . Cla10g00287 Cam10g0298 Cec10g0306 Cco10g0301 Clacu10g0297 Cmu10g1136 Cre10g0544 . . Cone11ag0591 Cone18ag0916 . . . . . . Bda07g00013 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011053 2 0 0 3 2 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 0 1 0 1 1 0 1 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00013 Bda_Chr07 FPKM 5.827306 5.838158 17.865665 16.104856 12.190259 13.972265 14.488231 14.804954 15.465689