Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00063 ATGGAGGAGAAAAGCAAAGTGTTGATAGTAGGAGGAACAGGGTATTTAGGAAAGAGGCTGGTGAAAGCGAGTCTAAGATTAGGGCATGAAACGTACGTAGTTCACAGGCCAGAAATAGGAGTGGACATCGAAAAAGTTCAGCTTTTAGTTTCGTTTAAACGGAAGGGAGCTCATCTTGTTCCAGCCTCTTTTAATGACTTCCATAGCCTGGTTCGAGCTGTAAAACTTGTTGACGTCGTCATTTCCGCCATTTCTGGTGTTCATATTCGCTCCCACCAAATATTACTTCAACTCAAGCTCGTTGACGCCATCAAAGAAGCTGAAAATGTCAAGCAGAGATTCTTGCCGTCGGAGTTTGGGACGGATCCGGCTAGAATGGAGAAGGCGATGGAGCCTGGAAGAGTGACTTTCGACGACAAAATGGAGGTCCGAAGAGCCATAGAAAGAGCCGGAATTCCCTTCACTTACGTCTCTGCAAACTGCTTCGCCGCTTACTTTCTCGGCGGTCTCTGTCAGCCCGGCAAACTTCTTCCGTCCAGAGAATCTGTCGTCTTGCTCGGAGATGGCAACCAAAAAGCAATTTATGTCGACGAGGACGACATAGCAACGTACACAATAAAAGCCATAGACGACCCAAGAACTTTGAACAAAACAATGTACATCAGGCCTCCGAAGAACATCTTGTCACAGAGAGAAGTTGTCGGGGTGTGGGAGAAGTTGATAGGGAAGGAGCTCGCCAAGTCGTCTCTCTCCGAACAAGACTTCCTTGCTTCCATGAAAGGGGAAGGGTACGAAGAGCAAGTAGGGTTGACGCATTACTATCAGGTGTGCTACGAGGGGTGCCTCACAAATTTTGAAATAGGCGAAGGAGGACTGGAAGCTACTGAGCTTTATCCACGCCTCGACTACACTACAGTTGAACAATATATGAAACGCTACGTTTGA 945 47.2 MEEKSKVLIVGGTGYLGKRLVKASLRLGHETYVVHRPEIGVDIEKVQLLVSFKRKGAHLVPASFNDFHSLVRAVKLVDVVISAISGVHIRSHQILLQLKLVDAIKEAENVKQRFLPSEFGTDPARMEKAMEPGRVTFDDKMEVRRAIERAGIPFTYVSANCFAAYFLGGLCQPGKLLPSRESVVLLGDGNQKAIYVDEDDIATYTIKAIDDPRTLNKTMYIRPPKNILSQREVVGVWEKLIGKELAKSSLSEQDFLASMKGEGYEEQVGLTHYYQVCYEGCLTNFEIGEGGLEATELYPRLDYTTVEQYMKRYV 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 886421 887671 - Bda025120.1 Bda07g00063 8953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00063 314 PANTHER BIFUNCTIONAL PINORESINOL-LARICIRESINOL REDUCTASE-LIKE 3 313 - -
Bda07g00063 314 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 274 IPR036291 -
Bda07g00063 314 Gene3D - 160 310 - -
Bda07g00063 314 Gene3D - 5 299 - -
Bda07g00063 314 PANTHER PINORESINOL REDUCTASE-RELATED 3 313 - -
Bda07g00063 314 CDD PCBER_SDR_a 6 309 IPR045312 GO:0016491
Bda07g00063 314 Pfam NmrA-like family 7 244 IPR008030 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00063 K21568 PLR; pinoresinol/lariciresinol reductase [EC:1.23.1.1 1.23.1.2 1.23.1.3 1.23.1.4] - pvy:116141105 513.457
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00063 Bda-Chr7:886421 Bda08g00941 Bda-Chr8:17607634 4.18E-87 dispersed
Bda07g00063 Bda-Chr7:886421 Bda07g00064 Bda-Chr7:890595 3.25E-149 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g816 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo03g00896 . Bda07g00063 . . Bpe11g00301 . . . . Cmo19g00217 . . . . . Cpe15g00174 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002260 2 2 2 1 2 2 0 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 1 2 0 2 2 3 6 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00063 Bda_Chr07 FPKM 17.320225 17.586205 14.570694 13.739923 27.419825 28.680546 28.034496 13.913682 12.655119