Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00064 ATGGCGAAGAGCAAGGTTTTGGTGGTGGGAGGAACAGGATACATAGGCAAGAGAATAGTGAAGGCATGTCTGGACGAGGGCCATCCCACCTTCGTTCTGCAGAGGCCGGAGATTGGCTTAGACATTGATAAACTTCAAACCCTTCTCTCCTTCAAACGACAAGGCGCTAAGCTTCTTATGGCCTCCTTTTCCGACCTCTCCTCCCTCGTCCACGCCGTTAAACAGGTCGACGTCGTCATCTCCGCCATGTCCGGCTTCCACTTTCGCAGCCATAACATTCTTGTCCAGCTCAAGCTTGTTGAGGCCATCAAATTAGCTGGAAATGTCAAGAAAGAAGAAACCCTGAATAACAGTTTTAAAAAACAAAAATTGTTGCAGAGATTCTTGCCGTCAGAATTTGGAATGGACCCAGCCAGAATGGGACATGCGCTTGAACCAGGAAGAGTGACGTTTGACGATAAAATGGTGGTGAGGAAAGCCATAGAAGAAGCTCAAATACCTTATACTTACGTTTCTGCGAATTGCTTCGCCGGATACTTCGTCGGAAACCTTTCTCAGATGGAGACACTCATTCCTCCGACGGATAAAGTCTTACTTTATGGAGATGGGAATGTTAAAGCGGTTTTCGCGGATGAAGACGACATCGGAAAATACACAGTAAAAGCAGTGGATGATCCTCGAACACTCAACAAAACACTTTATATCAGGCCCCCTGAAAACATTCTCACCCAGAGAGAATTAGTGGAGAAGTGGGAGAATCTTGTCGGAAAGAAACTAGAAAAGACATGCATTTCTGCAGAAGATTTCTTAGCCCCCATGAAAGATCTGGACTTTATGGGACAGGTGGCAATTGGACATTTCTATCACATATTCTACGAGGGCTGTTTGGCAAACTTTGAAATAGGAGAATGGGGAGAAGAGGCCTCAAATCTGTATCCAGAGGTGAAGTACACTCGCATAGAAGACTACCTAAAAATATATCTGTAA 987 45.09 MAKSKVLVVGGTGYIGKRIVKACLDEGHPTFVLQRPEIGLDIDKLQTLLSFKRQGAKLLMASFSDLSSLVHAVKQVDVVISAMSGFHFRSHNILVQLKLVEAIKLAGNVKKEETLNNSFKKQKLLQRFLPSEFGMDPARMGHALEPGRVTFDDKMVVRKAIEEAQIPYTYVSANCFAGYFVGNLSQMETLIPPTDKVLLYGDGNVKAVFADEDDIGKYTVKAVDDPRTLNKTLYIRPPENILTQRELVEKWENLVGKKLEKTCISAEDFLAPMKDLDFMGQVAIGHFYHIFYEGCLANFEIGEWGEEASNLYPEVKYTRIEDYLKIYL 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 890595 891872 + Bda025121.1 Bda07g00064 8954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00064 328 Pfam NmrA-like family 6 317 IPR008030 -
Bda07g00064 328 PANTHER BIFUNCTIONAL PINORESINOL-LARICIRESINOL REDUCTASE-LIKE 2 325 - -
Bda07g00064 328 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 274 IPR036291 -
Bda07g00064 328 Gene3D - 4 313 - -
Bda07g00064 328 PANTHER PINORESINOL REDUCTASE-RELATED 2 325 - -
Bda07g00064 328 CDD PCBER_SDR_a 5 323 IPR045312 GO:0016491
Bda07g00064 328 Gene3D - 174 324 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00064 K21568 PLR; pinoresinol/lariciresinol reductase [EC:1.23.1.1 1.23.1.2 1.23.1.3 1.23.1.4] - zju:107434370 498.049
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00064 Bda-Chr7:890595 Bda08g00941 Bda-Chr8:17607634 1.33E-82 dispersed
Bda14g00855 Bda-Chr14:6576826 Bda07g00064 Bda-Chr7:890595 5.02E-07 dispersed
Bda07g00063 Bda-Chr7:886421 Bda07g00064 Bda-Chr7:890595 3.25E-149 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g815 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo03g00895 . Bda07g00064 . . Bpe11g00302 . . . . Cmo19g00219 . . . . . Cpe15g00177 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002260 2 2 2 1 2 2 0 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 1 2 0 2 2 3 6 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00064 Bda_Chr07 FPKM 5.6078 6.73146 8.916806 8.946251 7.122833 7.676658 7.351365 11.249911 12.222913