Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00074 ATGTGTCGAAAAGAAACATTTGAAGCTGTTAACAACATGTTTCAAGATATTACTGCCAATCAAGATTTATTTGGAGGTAAAGTCATTGTATTGGGAGGGGATTTTCGACAGATATTGCCTGTGGTCCCAAAGGCGACTAGAAGTGCTATTGTTGATGTTTGTTTACAGCGTTCCTTCTTGTGGCAACACTTTACTAAATTCTCCTTGACATCGAATATGCGTGCCTCTGCAGATCCAGATTTTGCAAAATTTTTACTTGATATTGGTAATGGAACAGCCCCGACTGACCAACATAACTATATCCTCCTCCCACCGGAAATTATCGTTCCTTATATTGATGATTTTACTTCAATAACTGCGTTGGTAGACATTGTTTTTCCACACTTCGATGGCTTTGCAGAAAATTCCAATGACATAGTCTATAGAGGAATTTTAATCATCGATCTCTACGTGGCTTTTGCTGTCTCCACTGCTCTAATTCAGGTTGCTTATATGGCTTTTGTTGGCTCATTTCCATTCAACTCTTTCCTTTCGGGAGTACTTTCTTGCATTGGGACAGCTGTCCTTGCTGTTTGCCTTCGTATTCAAATAAATAAAGAAAATAAGGAGTTCAAGGATTTGGCACCCGAGCGAGCTTTTGCAGATTTTGTTCTTTGCAACTTAGTGCTTCATTTGGTGATTATGAATTTCCTTGGATAA 699 38.77 MCRKETFEAVNNMFQDITANQDLFGGKVIVLGGDFRQILPVVPKATRSAIVDVCLQRSFLWQHFTKFSLTSNMRASADPDFAKFLLDIGNGTAPTDQHNYILLPPEIIVPYIDDFTSITALVDIVFPHFDGFAENSNDIVYRGILIIDLYVAFAVSTALIQVAYMAFVGSFPFNSFLSGVLSCIGTAVLAVCLRIQINKENKEFKDLAPERAFADFVLCNLVLHLVIMNFLG 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 952590 961707 - Bda025132.1 Bda07g00074 8964

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00074 232 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT DAD1 145 232 - -
Bda07g00074 232 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT DAD1 145 232 IPR003038 GO:0008250|GO:0016021
Bda07g00074 232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 92 IPR027417 -
Bda07g00074 232 Pfam DAD family 141 232 IPR003038 GO:0008250|GO:0016021
Bda07g00074 232 Pfam PIF1-like helicase 1 136 IPR010285 GO:0000723|GO:0003678|GO:0006281
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00074 K12668 OST2, DAD1; oligosaccharyltransferase complex subunit epsilon - fve:101293446 165.236
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00074 Bda-Chr7:952590 Bda06g00161 Bda-Chr6:2320513 1.00E-103 dispersed
Bda07g00074 Bda-Chr7:952590 Bda02g00080 Bda-Chr2:3237835 1.65E-103 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g729 . . . . . . . . Cmo06g00635 Cmo16g01238 . . . . . Cpe14g00986 . . . . . . . . Cla10g00126 Cam10g0126 . . Clacu10g0131 Cmu10g0978 . Cone8ag0492 Cone12ag0490 . . Lsi07g01161 . . . Blo03g00884 . Bda07g00074 . . Bpe11g00314 . . . . . Cma06g00626 Cma16g01190 Car06g00561 Car16g01122 . . . . . . . . . . . . . . . . . Csa03g00134 Chy06g02173 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009636 1 2 1 1 1 1 2 0 0 1 1 1 2 0 1 2 1 2 2 0 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00074 Bda_Chr07 FPKM 2.171875 1.951284 1.033028 1.098686 4.64702 3.714772 4.170541 1.039482 0.982037