Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00080 ATGGATGCAAATATCGAAAAGGCATTGGATAATACTAAAAAAGCTGCACTCTATCTGAAAAGGAAGCGAGTGGCTGGTCATGCTGCATATTTCACGGAAGCTACTTGCACACCACATAGGTCTATCTTGAATTCTTCAGTGATTAACCTTAGAAAGAAGATTAAACTAGATAGACTCAAAAGCAAAGTCGTGAGCTCAGAGACTTTTTCTAGGTCATTACATAGATGTTATTCAAATTACATTAAGAGTGGCATGCCTCAACGTATAATGTATTACCAGAACAATGAATGGATCAATTTTCCCCATGCTGTTCTTGAATTAGTTAAGAAAGATCTTCAGGTCAAGAAAGCAGCTGTTGTTGTTGAATTTGATGGTCAAAGCTCTGTGCTTGACTTTTTGCATATGTTTCGCATGGATTTGCAGTCAGGAGTACATAATCCTCTTGCATGGATCGATGACTCAGGTAACTGCTTCTTTCCTGAAACTTATGTGACTGAACATGATGATTGCTGCCATCATAAAGGTTTGATTAATCAAGAGCCAATTCTTGGAGATCCTTTTGGCTCTCCTGAAATTAAACTGCATTTGGAAATTGAAATTAATGGAAGTGATCACTCTAGAGTGGAGGAATGTAGCGGTGACTCAAATTCTCTAGCCAAGCAGATTCAAATTGATGGGAATCATGCTAGCAATTATGTTATCGAGCTTGAAGATAGCTGCATTAGGAAGCCTGATGCTGAAACGGGTGAGGTTGTTGAGAAACTGCCAATTTTGGAGAGAGAATTGGCACCTGGAATTAAATTGGGTCATGAAAAGTTGGATCTTGAAACTGTTCGGGAAATGTTCCTTAGTGGAATGAGCTCCCTTGGTGGTGCAAATATTCTTGATATATATCGCAACGCTAGCACCTTTATGAAACTCCAATTGGAGCTTTTTAATAAACAAATAGAGGTGACCAAGCAGTATCGTGGTGATGCCAATGTTCGTTTTGCTTGGCTTCCTTTTTATAAAGCACATCTTTCTACTTTAATGTTGAATGGGCTGGGGCGTTGTGGAGCAACTTTGGCACACTCCACATTTGGCGGTGGTGTTCATCTCACAGCCGCCCACTGCCCTCATGTCAGTAAAATTATTGTGACATTTTGTTCTGATGTCAGAAAAGTATTTATGTTGTTATTTGTTCACAGTGCAAATTATTGTGATGTTGACGAAAATGGGATGCGGCATATGATCTTTTGCCGAGTAATTATGGGAAATATGGAGCTTTTGGGTATGGGAAGTAACCAATGCAACCCAAGCAGTAAGGATTTTGATAGTGGAGTGGACGATCTTCAAAATCCAAGACATTTTATTGTCTGGAATATGAACATGAATACGCATATTTATCCAGAATTTGTTGTCAGCTTCAAGGTTGATTTCAATGCTGAAGGGAATGGGGTTGGAAGTGAAAGAAAACATGATGTTTCTGATGTAACTACATCTTGTCGTGGACCTCCTTCTCAAGTGTACATAGAATCCTCTGCAATCTTTATGGGAAATGATGGTAAGTTAAGTTCAGGGTCGCCGAAATCGCATGAAAAAGCTGCTAATCTGGATTTTAAGAACTCTTTAAAAACTCCTAAATCTCCGTGGATGCCTTTTCCTATGTTGTTTGCTGCTATTGGCAACAACTTTCCTCCTAACAAAATGGAACTAGTTGAGAAGCACTATGATCTATTCAAGGCAAAGAAAATAAGTCGTGATGAATTTATCAAGAAGCTGAGACTAATTGTTGGAGATGGGTTATTGAGGTCTACAATAACAGATCTTCAAGGCAAGGTATGA 1824 38.98 MDANIEKALDNTKKAALYLKRKRVAGHAAYFTEATCTPHRSILNSSVINLRKKIKLDRLKSKVVSSETFSRSLHRCYSNYIKSGMPQRIMYYQNNEWINFPHAVLELVKKDLQVKKAAVVVEFDGQSSVLDFLHMFRMDLQSGVHNPLAWIDDSGNCFFPETYVTEHDDCCHHKGLINQEPILGDPFGSPEIKLHLEIEINGSDHSRVEECSGDSNSLAKQIQIDGNHASNYVIELEDSCIRKPDAETGEVVEKLPILERELAPGIKLGHEKLDLETVREMFLSGMSSLGGANILDIYRNASTFMKLQLELFNKQIEVTKQYRGDANVRFAWLPFYKAHLSTLMLNGLGRCGATLAHSTFGGGVHLTAAHCPHVSKIIVTFCSDVRKVFMLLFVHSANYCDVDENGMRHMIFCRVIMGNMELLGMGSNQCNPSSKDFDSGVDDLQNPRHFIVWNMNMNTHIYPEFVVSFKVDFNAEGNGVGSERKHDVSDVTTSCRGPPSQVYIESSAIFMGNDGKLSSGSPKSHEKAANLDFKNSLKTPKSPWMPFPMLFAAIGNNFPPNKMELVEKHYDLFKAKKISRDEFIKKLRLIVGDGLLRSTITDLQGKV 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1027060 1031794 + Bda025138.1 Bda07g00080 8970

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00080 607 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO1-RELATED 1 606 - -
Bda07g00080 607 Pfam RCD1-SRO-TAF4 (RST) plant domain 540 604 IPR022003 -
Bda07g00080 607 ProSiteProfiles PARP catalytic domain profile. 255 490 IPR012317 GO:0003950
Bda07g00080 607 ProSiteProfiles RST domain profile. 538 607 IPR022003 -
Bda07g00080 607 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 1 606 IPR044964 -
Bda07g00080 607 Gene3D - 264 472 - -
Bda07g00080 607 SUPERFAMILY ADP-ribosylation 276 470 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00080 - - - pvy:116108682 612.838
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00443 Bda-Chr3:3801953 Bda07g00080 Bda-Chr7:1027060 4.54E-68 dispersed
Bda07g00080 Bda-Chr7:1027060 Bda13g00643 Bda-Chr13:7397763 1.25E-36 dispersed
Bda07g00080 Bda-Chr7:1027060 Bda06g00332 Bda-Chr6:5312381 3.31E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g715 . . . . . . . . . . . . . . . . Cpe05g00159 . . . . . . . . . . . . . . . Cone12ag0487 . . . . . . Blo03g00880 . Bda07g00080 . . . . . . . . . . . . . . Bhi05g00449 . . Lac11g2448 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002998 3 6 2 2 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 2 2 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00080 Bda_Chr07 FPKM 3.331748 4.072631 12.549286 10.708496 6.045269 7.183087 5.959117 15.463054 16.205084