Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00084 ACAATGAGCTCGTCGGATATGGGGAGCGACTTGCCTGATCTAGTTTGCCACCTCGACAACGTCCAAGGGATGGTCGATGCCCTCACCGCCGTCCGATGGAAACGCCATCAGGATGCTGTCATCGAATTATCTGAGCACGGCATAGTTTTGATTGTTGAGGAATCAGGTTGCGTTCAAGCTAAAGTCTATCTTCAGCGTGAGCTTTTCATACGCTATGAGTACAGTGCACAAGGGAGGCCAAGATTAGGAGTGAGCTTGGGCATATTCGTGGATTGCTTGAACACATTTTCTGTTCCTGGACGTTCAAGCATGATTGAAATTCGATATCCTGGGCCCGACTATGCAGCTTATATTGATTCGCTTCATGCTTGTATTTATGCGGAGATTAGAACAAGAATCCCTGATACAATTTCTTGGGATTACAATTTTGAAGCAGCTGAAAGCGCTCCACTTTGTTTTACCGTTAAGTCTGCAGCACTGAAGGAAGCCATTGATGATCTTGAGTGGCCAGGATCAAGCATCCAGATCATTCTACAACCCAATCCTCCTTCTGTTACTTTTAAAGGCGAAGGCCATGGAGGATTGCAGATAGTCTTTTATTTTCGTAACATTCGATTATTGCAGATAGATTTCATGTATTACGTGAACACAGATCTCTTGATTTCCTTTCAGTGCGATCGTCAAATTTCTTACAAGTACAAATACAAATTTCTCAGAGTTACAACGTCAAATTTACCTGGCAGTGTAATTAAAGATAACAGAGGTAGCAAATTGACGATTGGAAGAGGAGGAATGTTAAAAGTACAGCACCTTGTCTCAGTGGGAAGATCATCTACATCAAACCAACATATTGACGCTGCTGGAAATCACCACCCGAGTAGAATTGCATTTATTGAGTTCTTTGTGAAACCAGAAGAAGAGGAAAACTAG 930 42.58 TMSSSDMGSDLPDLVCHLDNVQGMVDALTAVRWKRHQDAVIELSEHGIVLIVEESGCVQAKVYLQRELFIRYEYSAQGRPRLGVSLGIFVDCLNTFSVPGRSSMIEIRYPGPDYAAYIDSLHACIYAEIRTRIPDTISWDYNFEAAESAPLCFTVKSAALKEAIDDLEWPGSSIQIILQPNPPSVTFKGEGHGGLQIVFYFRNIRLLQIDFMYYVNTDLLISFQCDRQISYKYKYKFLRVTTSNLPGSVIKDNRGSKLTIGRGGMLKVQHLVSVGRSSTSNQHIDAAGNHHPSRIAFIEFFVKPEEEEN 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1079572 1082528 + Bda025142.1 Bda07g00084 8974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00084 309 PRINTS Repair protein Rad1/Rec1 family signature 16 33 IPR003021 GO:0000077
Bda07g00084 309 PRINTS Repair protein Rad1/Rec1 family signature 60 76 IPR003021 GO:0000077
Bda07g00084 309 PRINTS Repair protein Rad1/Rec1 family signature 255 272 IPR003021 GO:0000077
Bda07g00084 309 PRINTS Repair protein Rad1/Rec1 family signature 292 307 IPR003021 GO:0000077
Bda07g00084 309 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD1 10 308 IPR003021 GO:0000077
Bda07g00084 309 CDD PCNA 15 272 - -
Bda07g00084 309 Pfam Repair protein Rad1/Rec1/Rad17 15 103 IPR003021 GO:0000077
Bda07g00084 309 SUPERFAMILY DNA clamp 152 271 - -
Bda07g00084 309 Gene3D - 12 306 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00084 K02830 HRAD1, RAD17; cell cycle checkpoint protein [EC:3.1.11.2] - jre:109020226 488.804
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g701 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0481 Cone12ag0476 . . . . . . Blo03g00875 . Bda07g00084 . . Bpe11g00321 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010333 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00084 Bda_Chr07 FPKM 0.897733 1.037439 1.1082 0.837268 1.722452 1.744553 1.605541 2.63101 3.366754