Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00085 ATGGTTTTTGAAGAGTTAGTGAAGAGCGGAGCGAGCCCAACTGTTGTGACATACAGTACATATATTCATGGACTTTGTGGTAAAATATTTGAAGCTTTAAAGGTATTTGAAGATATGAAGAGATGTGGAATCCAGCCAGATGTTTATAGCTACAGCATTTTGGTTGATGGGTTATGCAAGAAAGGGGAGATTGAGCAAAGTTGGAATTTAATCGAGGAAATGAAACTCTATCAACTAAAACCATCCCTCGTTTGCTATACCTCATTAATTTACGGCCTTTGTAAAATCGGATTGATGGAGAGGTCTTTGGATATGTTCAAAAGTCTAAAAGAATGTGGTTATGAACATGATATGATTTCCTACGACATATTGATAAATGGATTTTGTATGCATGGTGACATGGATACTGCTACTAAACTTTTGGAGGAAATGATATGCAACAATTTAATTCCTGGCGTTTCCACCTATAGTGGTTTGATTTATGGTTTCTGCAAGATAAGAGATTTTCACAAGGCATCAGAACTGTACAATAGCATGCTCAAGCGTGGTATATTTTGTGATACTATGACTTTCAATGCTATTATTGAGGGTCATTGTAGCGAAGGCAACTTAACGGATGCTTTGAAACTTATGGATGAAGTGAAAGAATTCGGAATTATGGGTAACTCATATACCTATGCTGCAATTATCAAGAGACTGTGCAAAGAAAAGAAGTCAGACAAAGTTTGGGAAATATTTCCACTGATGCTAAAGAGGAATGTACGTCCAGAGGCCGTTCATTATGGTACCCTTATGGATGGTTATGCAAAAGAGGCAAATGAAAATGCGGCTTTAATGTTGTACACAATAATGGAAAATTTTGGGGTTAAGCCTGATCAAGTCACCTACACAATTCTTATTAATATGTTCTGCCATAGCAGAAAAATGTATGAAGCTGATAGCTTTTTCAAGCAAATGATTGTAAAAGGGGTGGTTCCAGATAAGATCTCATACACGTGTCTGATTGCTGGATTTTGTAGAACTGGGTACGTGAAGAAGGCCTGGAGTTTGTTCAAAGAAATGATTCAGAAAGGTCATTCGCCAAGTGTTGTTACTTACACTTGTCTGATCGATGGGTATTTGAAGTCGGGTCGTATGGACATTGCTGACTCTTTGTTCGAGGAAATGAAGCGAAATAAAATTGCCCCGGATGTGGTAACTTACACTGCTCTCATTGCTGGTTATCGAAGACTTGGAAAATTCGATAAAGCTGATGCAACTTTTGACGAAATAAAGACAGTTGGTATAATTCCAGATGATGTTACCTGTTTGACGATGGGTATGCAGATGTTGTTTCAAAAGTCTAGGAGTCTGGAAAATCATGGAAGACACTGA 1374 37.85 MVFEELVKSGASPTVVTYSTYIHGLCGKIFEALKVFEDMKRCGIQPDVYSYSILVDGLCKKGEIEQSWNLIEEMKLYQLKPSLVCYTSLIYGLCKIGLMERSLDMFKSLKECGYEHDMISYDILINGFCMHGDMDTATKLLEEMICNNLIPGVSTYSGLIYGFCKIRDFHKASELYNSMLKRGIFCDTMTFNAIIEGHCSEGNLTDALKLMDEVKEFGIMGNSYTYAAIIKRLCKEKKSDKVWEIFPLMLKRNVRPEAVHYGTLMDGYAKEANENAALMLYTIMENFGVKPDQVTYTILINMFCHSRKMYEADSFFKQMIVKGVVPDKISYTCLIAGFCRTGYVKKAWSLFKEMIQKGHSPSVVTYTCLIDGYLKSGRMDIADSLFEEMKRNKIAPDVVTYTALIAGYRRLGKFDKADATFDEIKTVGIIPDDVTCLTMGMQMLFQKSRSLENHGRH 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1084328 1085815 - Bda025143.1 Bda07g00085 8975

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00085 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Bda07g00085 457 PANTHER (PPR) REPEAT PROTEIN, PUTATIVE-RELATED 27 437 - -
Bda07g00085 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 47 81 IPR002885 -
Bda07g00085 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Bda07g00085 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Bda07g00085 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 152 186 IPR002885 -
Bda07g00085 457 TIGRFAM PPR: pentatricopeptide repeat domain 49 82 IPR002885 -
Bda07g00085 457 TIGRFAM PPR: pentatricopeptide repeat domain 190 219 IPR002885 -
Bda07g00085 457 TIGRFAM PPR: pentatricopeptide repeat domain 329 363 IPR002885 -
Bda07g00085 457 TIGRFAM PPR: pentatricopeptide repeat domain 224 256 IPR002885 -
Bda07g00085 457 TIGRFAM PPR: pentatricopeptide repeat domain 294 327 IPR002885 -
Bda07g00085 457 TIGRFAM PPR: pentatricopeptide repeat domain 260 292 IPR002885 -
Bda07g00085 457 TIGRFAM PPR: pentatricopeptide repeat domain 364 398 IPR002885 -
Bda07g00085 457 TIGRFAM PPR: pentatricopeptide repeat domain 84 117 IPR002885 -
Bda07g00085 457 TIGRFAM PPR: pentatricopeptide repeat domain 399 432 IPR002885 -
Bda07g00085 457 TIGRFAM PPR: pentatricopeptide repeat domain 16 48 IPR002885 -
Bda07g00085 457 TIGRFAM PPR: pentatricopeptide repeat domain 155 187 IPR002885 -
Bda07g00085 457 TIGRFAM PPR: pentatricopeptide repeat domain 119 151 IPR002885 -
Bda07g00085 457 Gene3D Tetratricopeptide repeat domain 1 78 IPR011990 GO:0005515
Bda07g00085 457 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 27 437 - -
Bda07g00085 457 Gene3D Tetratricopeptide repeat domain 79 145 IPR011990 GO:0005515
Bda07g00085 457 Gene3D Tetratricopeptide repeat domain 321 391 IPR011990 GO:0005515
Bda07g00085 457 Gene3D Tetratricopeptide repeat domain 146 220 IPR011990 GO:0005515
Bda07g00085 457 Gene3D Tetratricopeptide repeat domain 222 320 IPR011990 GO:0005515
Bda07g00085 457 Gene3D Tetratricopeptide repeat domain 392 449 IPR011990 GO:0005515
Bda07g00085 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Bda07g00085 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Bda07g00085 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Bda07g00085 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 117 151 IPR002885 -
Bda07g00085 457 SUPERFAMILY HCP-like 132 318 - -
Bda07g00085 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 82 116 IPR002885 -
Bda07g00085 457 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 26 - -
Bda07g00085 457 PANTHER (PPR) REPEAT PROTEIN, PUTATIVE-RELATED 2 26 - -
Bda07g00085 457 Pfam PPR repeat family 117 165 IPR002885 -
Bda07g00085 457 Pfam PPR repeat family 27 60 IPR002885 -
Bda07g00085 457 Pfam PPR repeat family 187 235 IPR002885 -
Bda07g00085 457 Pfam PPR repeat family 361 408 IPR002885 -
Bda07g00085 457 Pfam PPR repeat family 291 340 IPR002885 -
Bda07g00085 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Bda07g00085 457 Pfam PPR repeat 259 289 IPR002885 -
Bda07g00085 457 Pfam PPR repeat 84 113 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00085 - - - jre:108984135 530.406
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00085 Bda-Chr7:1084328 Bda07g00761 Bda-Chr7:9033063 4.51E-11 dispersed
Bda07g00085 Bda-Chr7:1084328 Bda10g00563 Bda-Chr10:39624188 5.96E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g700 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g00085 . . Bpe11g00322 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00085 Bda_Chr07 FPKM 4.717002 4.759008 4.401889 4.619583 9.138623 7.932956 9.807036 7.056838 5.345555