Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00086 ATGAGAGGTGCTGGAAGAGGGGGTTTATTGGACCGTTCAAGGATTTTCAACGAGGCTTCCGACCTCAAATCTCAAGATCAAAACCAGGCCGTCGCTTCCATGTCCGAGTCGCAACGTAAGGGGTCAGAAAATCCCAAAAATCAAAGACATTGGAAGAAGGAATCAAGGAATCCGCGCGCTCGGGTGGCCAAAACTCGATACGTCAAGAAATTGGAATTGAGTTCGTTGCCCGCTGAAGTTGTTTCCTTGAGTAATAAAGTAGAGTCTATTACTTTTGGTGAAGAGGTCAAAGAGCCGGGGGCAAAGGAAGTGGTAGAGAAAATTGAAGTTCCTGAGTCTAGTGGAGCTGAGGACGATGTTTTTAGTCGCTTGGAAAATTTGTGGCAGCGCGTTGTTGAGCCGGACTTGTCCGAGGAGCAGCTTAGAATCAACGATCAGTTACAGGAAGACGAGTTGCTTGCTACAGAGTCCATATACGGAAACAATGTGTACATGCTTGATCGACAGAGAGGCCTACGTTCTTTCCAGATTTATATTAATGTTGAGGCCCCAGGAGAAATTGCTGTTACTGCAATTTTAAAATCACAAAATAATCTAGAGGGTGAATGGAATAGATCCAATGATTTCTCTTATTCTTTTAACGTTAAGTACCTGCCCCCTATTGTTCTGACATTTTTATTACCTAAATCATATCCTAGTCACCTTCCACCATTATTTACAATATCTGCTCTGTGGTTGAACCCTCATAGGATTTCTGATCTTTGCTCCAAATTAGATTCAATTTCAATGGAAAATTTAGGGCAAGAAGTCATATACCATTGGGTGGACTGGTTATACAGTTCCTCTCTTCCTTTTCTTGACTTCGATAGAGAAATAAAACTTGGTCCTTATGGGTTGAGACATAGTGGAGACTTACGTGTGATGTCAGGGAGTATTTCTCCAGATATTGATGTTCCAGCTTTGAGGAGCTACAATAATGAGAGACTCCTTCAGAAATTTTGGGACGAGCAGCATGAATGTAGTATCTGTTTTAGTGAATATGCAGGTACTGAATTTTTCAGACTGCCATGCCAGCATTTCTTTTGTTCACAATGCTTGCAAACTTATTCTAAAATGCATGTCAGGGAAGGGACTGTAGTCAAACTTCAATGTCCTGAGGCTAAATGTTTTGGTGTAATTCCACCTGGTTTGTTGAAGAGGTTACTTGGTGACGAAGAGTTTGAGCGATGGGAGTCTATATTGTTGACGAAGACACTTGAGTCTATGTCTGACATTGTTTACTGCCCAAGATGTGAAACCCCTTGCATAGAGGATGGTGGCCAGCATGCTCTTTGCTCAAAATGCTTTTTCAGTTTTTGTACACTCTGTAGGGAGCGACGCCACGTTGGAATAGAATGCATGACTCCAGAAATGAAGCTTCTACTTCTGGAGAAACGCCAGAATTCAACTCAACTTAATGCTGATCAGAGACGTAAAGAACTTGACATGATCAATGAAATTCTTAGTGTCAAGGAAATATTTCGCGATGCAAAACAGTGTCCATTTTGTAAAATGGCAATATCTCGAACTGAAGGGTGCAACAAGATGGTGTGCGGTAATTGTGGTCATTACTTTTGCTACCGCTGTAACAAGGAAGTTGACGGATATGATCATTTCAGGGATGGTTCCTGTGAGTTGTTCCCTCGAGAAATGATTGAGGGTTGGGAAGAGCGAATAAACCAACGACAAGTGATTGGTCAAATTCAAGCACAGCTGTTTGCTGATCATCGTCATCTCTGCCCCAATTGCGGTCAACCCAATGCGAAGGTTGGTAATAATAATCATATATTTTGCTGGGCTTGCCAAAACCACCACTGCTTTTTATGCAAAAAGATCGTCAGACGCGGTTCTCATCATTATGGACCAAAGGGCTGCAAACAACACACAGAGGGCTAG 1935 42.27 MRGAGRGGLLDRSRIFNEASDLKSQDQNQAVASMSESQRKGSENPKNQRHWKKESRNPRARVAKTRYVKKLELSSLPAEVVSLSNKVESITFGEEVKEPGAKEVVEKIEVPESSGAEDDVFSRLENLWQRVVEPDLSEEQLRINDQLQEDELLATESIYGNNVYMLDRQRGLRSFQIYINVEAPGEIAVTAILKSQNNLEGEWNRSNDFSYSFNVKYLPPIVLTFLLPKSYPSHLPPLFTISALWLNPHRISDLCSKLDSISMENLGQEVIYHWVDWLYSSSLPFLDFDREIKLGPYGLRHSGDLRVMSGSISPDIDVPALRSYNNERLLQKFWDEQHECSICFSEYAGTEFFRLPCQHFFCSQCLQTYSKMHVREGTVVKLQCPEAKCFGVIPPGLLKRLLGDEEFERWESILLTKTLESMSDIVYCPRCETPCIEDGGQHALCSKCFFSFCTLCRERRHVGIECMTPEMKLLLLEKRQNSTQLNADQRRKELDMINEILSVKEIFRDAKQCPFCKMAISRTEGCNKMVCGNCGHYFCYRCNKEVDGYDHFRDGSCELFPREMIEGWEERINQRQVIGQIQAQLFADHRHLCPNCGQPNAKVGNNNHIFCWACQNHHCFLCKKIVRRGSHHYGPKGCKQHTEG 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1098479 1104368 - Bda025144.4 Bda07g00086 8976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00086 644 MobiDBLite consensus disorder prediction 18 60 - -
Bda07g00086 644 ProSiteProfiles Zinc finger RING-type profile. 340 388 IPR001841 -
Bda07g00086 644 MobiDBLite consensus disorder prediction 20 41 - -
Bda07g00086 644 SUPERFAMILY UBC-like 144 278 IPR016135 -
Bda07g00086 644 SMART ring_2 513 560 IPR001841 -
Bda07g00086 644 SMART ring_2 428 456 IPR001841 -
Bda07g00086 644 SMART ring_2 340 387 IPR001841 -
Bda07g00086 644 SMART ring_2 593 622 IPR001841 -
Bda07g00086 644 Pfam Zinc finger, C3HC4 type (RING finger) 340 385 IPR018957 GO:0046872
Bda07g00086 644 Pfam IBR domain, a half RING-finger domain 408 466 IPR002867 -
Bda07g00086 644 Pfam IBR domain, a half RING-finger domain 508 546 IPR002867 -
Bda07g00086 644 SUPERFAMILY RING/U-box 585 641 - -
Bda07g00086 644 ProSitePatterns Zinc finger RING-type signature. 357 366 IPR017907 -
Bda07g00086 644 Gene3D Ubiquitin Conjugating Enzyme 137 285 IPR016135 -
Bda07g00086 644 SMART ibrneu5 408 466 IPR002867 -
Bda07g00086 644 SMART ibrneu5 495 557 IPR002867 -
Bda07g00086 644 SUPERFAMILY RING/U-box 501 553 - -
Bda07g00086 644 SMART RWD2001b 150 285 IPR006575 GO:0005515
Bda07g00086 644 Gene3D - 481 587 - -
Bda07g00086 644 ProSiteProfiles TRIAD supradomain profile. 336 563 IPR044066 -
Bda07g00086 644 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 123 584 - -
Bda07g00086 644 Pfam RWD domain 146 279 IPR006575 GO:0005515
Bda07g00086 644 ProSiteProfiles RWD domain profile. 150 285 IPR006575 GO:0005515
Bda07g00086 644 SUPERFAMILY RING/U-box 336 421 - -
Bda07g00086 644 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 335 423 IPR013083 -
Bda07g00086 644 SUPERFAMILY RING/U-box 408 470 - -
Bda07g00086 644 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 123 584 IPR031127 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00086 K11971 RNF14, ARA54; E3 ubiquitin-protein ligase RNF14 [EC:2.3.2.31] - pvy:116106562 839.721
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00086 Bda-Chr7:1098479 Bda08g00149 Bda-Chr8:1419256 2.59E-14 dispersed
Bda07g00086 Bda-Chr7:1098479 Bda02g00781 Bda-Chr2:48506125 1.49E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g699 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00114 . Blo03g00874 . Bda07g00086 . . Bpe11g00323 . . Sed01g4129 . Cmo19g00236 . . . . . Cpe15g00198 Bhi05g00464 Tan07g2001 Cmetu04g1279 Lac11g2439 Hepe06g1792 . Lcy12g1964 Cla09g01103 Cam09g1156 Cec09g1165 Cco09g1180 . . Cre09g1118 . Csa03g04588 . Cme04g00137
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011677 1 1 1 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00086 Bda_Chr07 FPKM 0.0 0.0 12.321522 15.673013 1.570054 0.0 0.0 3.229743 4.127585