Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00092 ATGGGGTCGTTGGGCAGTCCTAAAACTTGGATTCCTTATATGAACAGTAAGGATTGTTTGCAAGGATTTTGTAGCATTTACTGTCCGCAGCGGTGTTACGTCATCTCCACTCCTCCACCGCCGGTGGAATTTTCCGACGAAAATCCCGGCCTTAATTTCTCTCCCCTTGTCGTTGCGATTATAGGAATTTTAGCCAGTGCTTTTCTTCTGGTAAGCTATTATACCATAATCTCCAAGTACTGCGGGGAATCGAATCGATCAGGGCGAAGAGAAAATCGTAATGTTAATGGAGAATTAGATGATAATTTGAATCTGAATTTACATGAACCTTGGCAAGCTTCCTCCAATGGCGTAGAAGAGGCTCTTATAAACTCCATTGCTGTCTGTAAGTACAAAAGAGGAGATGGATTGGTAGAAATTACAGAGTGTTCTGTTTGCTTAAGTGAGTTTGAAGAAGATGAAGAGATCAGGCTTTTGCCCAAGTGTAGCCATGCATTTCATCTTCCTTGCATTGATAAATGGCTCAAAGCTCACTCCAACTGCCCACTGTGCAGAGCTAACATTTTCTCTCTCTACAGTTCTTTGCCGCTTCATTCTCTCGCATCCATTGAAAACCCACCTTCCGATGAACCAAATGCAGAAACCCACCTGGGAGATGAGAGAGAATCTATTGAAAATAGCTCGGAAAGACAAGATTCAGGGGATGAAATCAGGCAGAGGGATGGAGTTGGTGAGCTGGGCGATGTTATAATCGAAATCTCAGATGAAGGATTCAAACCCATTAGAAGGTCCGTTTCGCTGGATCATTCGAGCCGAAATCGCGAGTGGGTCGCCAAAGATGTAGAAGAGATTGGATCGTCGAAACAGCCGTCGGAGGAGGGTGGAGAGTTTAAGTTCAGTCACAAGAAATGGATATTGGATTGTGTAATTTCGCCGGTTCCGATGAAGAGATCGTTTTCCAGTGAAAGATTCCTTCTCACTAGACAAGGAAGAGGAAGTAGTGTTCTTCCCGTCTGA 1017 44.15 MGSLGSPKTWIPYMNSKDCLQGFCSIYCPQRCYVISTPPPPVEFSDENPGLNFSPLVVAIIGILASAFLLVSYYTIISKYCGESNRSGRRENRNVNGELDDNLNLNLHEPWQASSNGVEEALINSIAVCKYKRGDGLVEITECSVCLSEFEEDEEIRLLPKCSHAFHLPCIDKWLKAHSNCPLCRANIFSLYSSLPLHSLASIENPPSDEPNAETHLGDERESIENSSERQDSGDEIRQRDGVGELGDVIIEISDEGFKPIRRSVSLDHSSRNREWVAKDVEEIGSSKQPSEEGGEFKFSHKKWILDCVISPVPMKRSFSSERFLLTRQGRGSSVLPV 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1133298 1134352 - Bda025150.1 Bda07g00092 8982

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00092 338 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Bda07g00092 338 SUPERFAMILY RING/U-box 126 196 - -
Bda07g00092 338 MobiDBLite consensus disorder prediction 203 241 - -
Bda07g00092 338 CDD RING-H2_PA-TM-RING 142 185 - -
Bda07g00092 338 Pfam Ring finger domain 142 185 IPR001841 -
Bda07g00092 338 MobiDBLite consensus disorder prediction 213 241 - -
Bda07g00092 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 191 IPR013083 -
Bda07g00092 338 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 4 330 IPR044675 -
Bda07g00092 338 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 4 330 - -
Bda07g00092 338 SMART ring_2 143 184 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00092 - - - mcha:111026146 360.533
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00376 Bda-Chr2:44141695 Bda07g00092 Bda-Chr7:1133298 5.00E-22 dispersed
Bda03g01471 Bda-Chr3:52871957 Bda07g00092 Bda-Chr7:1133298 2.47E-21 dispersed
Bda05g01205 Bda-Chr5:60022977 Bda07g00092 Bda-Chr7:1133298 4.73E-23 dispersed
Bda07g00092 Bda-Chr7:1133298 Bda13g00470 Bda-Chr13:5648394 9.88E-62 dispersed
Bda07g00092 Bda-Chr7:1133298 Bda12g00528 Bda-Chr12:8224127 4.75E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g679 . . . . . . . Bma14g00158 . . Cma02g01617 . Car02g01377 . . . Cpe05g00173 . . . . . . . . . . . . . . . . . . . . Chy04g00102 . . . Bda07g00092 . . Bpe11g00330 . . Sed02g1537 Cmo02g01662 Cmo19g00246 . . . . . Cpe15g00207 Bhi05g00484 Tan07g1986 Cmetu04g2051 Lac11g2423 Hepe06g1781 . Lcy12g1954 . . . . . . . . Csa03g04600 . Cme04g00127
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001850 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00092 Bda_Chr07 FPKM 0.245014 0.0 0.0 0.0 0.0 0.322298 0.0 0.0 0.0