Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00098 ATGAATTCAATTCTGCAGTGCATGACACATACCACATTGCTCGTGCAAGGTCTCCGGACTGCAGATCATTTGCAGATCTGTCAATGTGGGGATAAATATTTCTGCCTTTTCTGTGCTCTCCACGACCACATTGAACTTTCACTTTCTTCATCAGGAGGGGTCGTTTTGCCCCATAAACTCGTCGACAACTTGAGCTATATCTCATCTTATTTCAAGAAATTACAGCAGGAAGACGCCCATGAGTTCCTGCAATGCTTGTTAGATAAACTCGGAGGACCTTGCTTGGTGTTAATGGAAAACAAAAGAAGGTTGGCTTGTGAGAGTGATAACTTAGTGAAAAGGATCTTTGGTGGTCGTCTTATAAGCAAACTTCGCTGTTGCAATTGCGGGCATTTATCTGACAAGATTGAGCCTCTAATGGACCTGAGTCTGGAGATCGAAAATGTCCATTCTCTTTCTGGTGCTTTGGAATCTTTCACCAAAGTCGAAAAAATTGTTGAGCTCTGTTACGAACTATATGCTATCGTTGAGCATGTGGGAGAGGCATCTACTTCTGGACACTATATCAGCTTCGTTCGTTCTTCTCCGAATTCATGGTTTAGACTTGATGACTCCAAGGTTACTTTGGTCCCAGAAAACTATGTGTTGTCCCAGGAGGCATACATTCTCTTTTACGCAAAGAAGGGAACACCATGGGCGTGTACTTTAATGGAAGGACAGAAGCCAAGGTTTGCTTTGATTGCATTGCCCATGTCTGTGCCAGATGACTCAGGTCATCGAGAGCCAATGATTGATAATCGCAATGTCGATGAATCCACAGAATTTGGACGTGTTGTTCCTTCTCAGAGCTCGAGTCATCCTCTCTCGACCCAACCCTCTGGAGCAGTGGAAGAATTCGACAATAATGCGGGGCAAGATGCTTCGAAATCAGGTAATGAAGAAAACGAAGTGCATGGAAAGGTGGATGATAGTAGAGATATGGATTGTTTTCATACGCTTACGCCGGCTGGATCTCCCAAACCCGACACAGCAATTTTGGAGCCTCAGGCACGTCCTAAGCCTGAAAAACATGCGAATGCTGAAAGGCCAAGGAAGAAGGTGGTGGACAGCAGGGAGAAAAGAGAAGCTGAGAGGCCATTGAAGAAGGTGATGGACAATAGTGAGAAGAAAGAAGCCTTAAGATATGTTCAGAGGAGCATGCCTAGTGCAAGGGGAATGAGGTTCATCGCAGCCATGCTTGAATGTCGTGGCGAAGGTTCGAGTGGTAAGGCAAGGAAGAGAACAAGAACATCTCCTTGTAAAAAGTCTGGCTCCCCTAATACTCGCCGGAAGCTCCCCCATAATTCGGTTGCTCGGTTTGTGGAGGCTGGAAATTGA 1377 45.46 MNSILQCMTHTTLLVQGLRTADHLQICQCGDKYFCLFCALHDHIELSLSSSGGVVLPHKLVDNLSYISSYFKKLQQEDAHEFLQCLLDKLGGPCLVLMENKRRLACESDNLVKRIFGGRLISKLRCCNCGHLSDKIEPLMDLSLEIENVHSLSGALESFTKVEKIVELCYELYAIVEHVGEASTSGHYISFVRSSPNSWFRLDDSKVTLVPENYVLSQEAYILFYAKKGTPWACTLMEGQKPRFALIALPMSVPDDSGHREPMIDNRNVDESTEFGRVVPSQSSSHPLSTQPSGAVEEFDNNAGQDASKSGNEENEVHGKVDDSRDMDCFHTLTPAGSPKPDTAILEPQARPKPEKHANAERPRKKVVDSREKREAERPLKKVMDNSEKKEALRYVQRSMPSARGMRFIAAMLECRGEGSSGKARKRTRTSPCKKSGSPNTRRKLPHNSVARFVEAGN 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1160918 1163269 - Bda025156.1 Bda07g00098 8988

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00098 458 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 228 IPR028889 -
Bda07g00098 458 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 167 404 - -
Bda07g00098 458 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 1 165 - -
Bda07g00098 458 MobiDBLite consensus disorder prediction 416 458 - -
Bda07g00098 458 SUPERFAMILY Cysteine proteinases 1 227 IPR038765 -
Bda07g00098 458 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 170 188 IPR018200 GO:0004843|GO:0006511
Bda07g00098 458 Pfam Ubiquitin carboxyl-terminal hydrolase 168 225 IPR001394 GO:0004843|GO:0016579
Bda07g00098 458 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 167 404 - -
Bda07g00098 458 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 165 - -
Bda07g00098 458 MobiDBLite consensus disorder prediction 276 386 - -
Bda07g00098 458 Gene3D Cysteine proteinases 1 167 - -
Bda07g00098 458 MobiDBLite consensus disorder prediction 349 386 - -
Bda07g00098 458 MobiDBLite consensus disorder prediction 276 310 - -
Bda07g00098 458 Gene3D Cysteine proteinases 168 231 - -
Bda07g00098 458 MobiDBLite consensus disorder prediction 311 329 - -
Bda07g00098 458 Pfam Ubiquitin carboxyl-terminal hydrolase 1 135 IPR001394 GO:0004843|GO:0016579
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00098 K11855 USP36_42; ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12] - qsu:112012452 288.885
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00098 Bda-Chr7:1160918 Bda05g00800 Bda-Chr5:56450859 2.23E-07 dispersed
Bda07g00098 Bda-Chr7:1160918 Bda09g00895 Bda-Chr9:24988485 2.32E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g673 . . . . . . . Bma14g00154 . Cmo16g01210 . . . . Sed02g0114 Cpe14g00962 . Bhi11g00158 Tan01g2190 Cmetu06g2228 . . Mch10g1656 . Cla10g00157 Cam10g0157 Cec10g0167 Cco10g0166 Clacu10g0159 Cmu10g1008 Cre10g0418 Cone8ag0473 Cone12ag0467 . . Lsi07g01196 . . Cme06g02471 Blo03g00860 . Bda07g00098 . . Bpe11g00335 . . . . . . Cma16g01159 . Car16g01099 . . . . . . . . . . . . . . . . . Csa03g00168 Chy06g02145 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003716 1 3 2 2 2 1 1 1 1 1 1 1 2 2 2 1 1 2 1 1 2 2 2 2 1 1 1 4 1 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00098 Bda_Chr07 FPKM 2.756646 0.0 13.978447 13.405298 33.193806 36.310131 33.318729 3.744117 4.937272