Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00105 ATGGCTGTTTCTCCTGAGCAAGAACCTCCATCTCCTGCGGTTCTTCAAGCAGTGGATGAAATCATGAGGATTTACAGATCACTGCCTCGGAGACCTTCCATTGAAGAGGTTGAAGCTGCTGCGTCCGTTGTTCAAACTGTCAATAACGAAGAGCAGGCGAAGCTCGAAGAAATTTCAAAAAAGGAGGCTCCGCAGGGTGTTCCCGTGGAGCTCTTCTCTGTTCTGCGGCAGGTGAGGGAGAACGTTGTTTTGTTGCATAGTCATAGGCAGAAGAGAGAGGCTCTTCACCTCGTCGAGCTGGATAAGATGTTTCAAACGTTCGATGATCTCATTCAGAGAACTTCTAGGGTTGTTTCTGGTGATACGAATGCTGAAAAATTTGTTGACTCGAGTGAGCCGGTGGAGAAACTTGAAATCAGTGATGCAAGTCTCGTGAAGAAGGTGGAAGATGAAGAATCGGAAAGAAATGATAGAAAGGGTTTGGTTAGGAATTTGTCGGCCAAAGCTTTTTTATCTTCAGTAACTTTTACAACAATAAACTCAATGGTTCTTCCTTTTCTGGTTATTGCAGGAGGAGACTTTGGGAAAATGAGTTTGATGAAAGTGGCAGCTCTGATTGAGAACTCAGCTAAAAAGGGTTCAATTGTGCTTGATCTGAAAGGAAAGTTGATGGATCAGACGGAATCTCTTCCTGTTTCTATCGGGAAATTATCAGATCTTACTGAATTAGACCTGTCTGAAAACAAGATCACTGTTCTTCCACCCTCCATTGTTAGCCTCAGATCCTTGGTGAAGCTTGACCTCCATTCAAATCAGCTTGCCAACCTTCCTGATTCATTAGGTGAACTCATCAATCTGACTGACTTTGAACTTCGCGCAAACCGTCTAAAATCACTGCCTGCTTCGTTCGGTAGTTTGACAAACCTCGTTAATCTCAACTTGAGTTCAAATCAATTCACCCATTTGCCAGAAGCAATTGGAAATTTGACATGTTTGAAGAGACTGAATGTGGAAACTAATGAGCTTGAAGAATTGCCTTACACCATTGGATCTTGCTCATCACTAATAGAGCTAAGATTGGATTTCAATCAGCTCAAGGCTCTTCCAGAAGCCATAGGAATTCTCACCCTCCATTATAATAGAATCAAAGGTCTTCCTACAACAATGGGTAATCTTTTGAATTTGAAAGAACTGGATGTTAGCTTCAACGAACTCGAATCAATTCCAGAGAACCTCTGTTTCGCAGTAAACCTTAAGAAATTAAACGTGGGGAAGAACTTTGCAGATCTTAGATTCTTGCCAAGATCAATAGGAAATCTTGAGATGCTGGAAGAGTTGGATATAAGTGCCAATCAAATAACAGCTCTACCAGAATCTTTCAGATTCCTATCCAAATTGAGAGTCCTTCAAATAGATGAAACACCATTAGAAGATCCACCCACACAAATTCTTAAAATGGGCGCACAGGCTGTTGTTCAGTACATGACAGATTTGGTAGCTAAAAAGAATACAAAGCCTCAACAACAAGAGAACAAAGGCTTTTTGTTCTGGGTTTGTTCAATACTTTGCTCACACAAAAGAGATTCCGCCTAA 1593 41.43 MAVSPEQEPPSPAVLQAVDEIMRIYRSLPRRPSIEEVEAAASVVQTVNNEEQAKLEEISKKEAPQGVPVELFSVLRQVRENVVLLHSHRQKREALHLVELDKMFQTFDDLIQRTSRVVSGDTNAEKFVDSSEPVEKLEISDASLVKKVEDEESERNDRKGLVRNLSAKAFLSSVTFTTINSMVLPFLVIAGGDFGKMSLMKVAALIENSAKKGSIVLDLKGKLMDQTESLPVSIGKLSDLTELDLSENKITVLPPSIVSLRSLVKLDLHSNQLANLPDSLGELINLTDFELRANRLKSLPASFGSLTNLVNLNLSSNQFTHLPEAIGNLTCLKRLNVETNELEELPYTIGSCSSLIELRLDFNQLKALPEAIGILTLHYNRIKGLPTTMGNLLNLKELDVSFNELESIPENLCFAVNLKKLNVGKNFADLRFLPRSIGNLEMLEELDISANQITALPESFRFLSKLRVLQIDETPLEDPPTQILKMGAQAVVQYMTDLVAKKNTKPQQQENKGFLFWVCSILCSHKRDSA 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1289622 1291625 - Bda025166.1 Bda07g00105 8995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00105 530 PANTHER LEUCINE-RICH REPEAT-CONTAINING 12 528 - -
Bda07g00105 530 SMART LRR_bac_2 306 325 - -
Bda07g00105 530 SMART LRR_bac_2 329 348 - -
Bda07g00105 530 SMART LRR_bac_2 237 256 - -
Bda07g00105 530 SMART LRR_bac_2 352 371 - -
Bda07g00105 530 SMART LRR_bac_2 440 459 - -
Bda07g00105 530 SMART LRR_bac_2 392 411 - -
Bda07g00105 530 SMART LRR_bac_2 260 279 - -
Bda07g00105 530 SMART LRR_sd22_2 306 331 - -
Bda07g00105 530 SMART LRR_sd22_2 237 262 - -
Bda07g00105 530 SMART LRR_sd22_2 392 414 - -
Bda07g00105 530 SMART LRR_sd22_2 440 465 - -
Bda07g00105 530 SUPERFAMILY L domain-like 226 481 - -
Bda07g00105 530 SMART LRR_typ_2 440 462 IPR003591 -
Bda07g00105 530 SMART LRR_typ_2 392 415 IPR003591 -
Bda07g00105 530 SMART LRR_typ_2 329 352 IPR003591 -
Bda07g00105 530 SMART LRR_typ_2 237 259 IPR003591 -
Bda07g00105 530 SMART LRR_typ_2 260 281 IPR003591 -
Bda07g00105 530 SMART LRR_typ_2 306 328 IPR003591 -
Bda07g00105 530 SMART LRR_typ_2 283 305 IPR003591 -
Bda07g00105 530 SMART LRR_typ_2 353 375 IPR003591 -
Bda07g00105 530 Gene3D Ribonuclease Inhibitor 195 374 IPR032675 -
Bda07g00105 530 ProSiteProfiles Leucine-rich repeat profile. 239 260 IPR001611 GO:0005515
Bda07g00105 530 Pfam Leucine rich repeat 235 273 IPR001611 GO:0005515
Bda07g00105 530 Pfam Leucine rich repeat 285 342 IPR001611 GO:0005515
Bda07g00105 530 Gene3D Ribonuclease Inhibitor 375 498 IPR032675 -
Bda07g00105 530 ProSiteProfiles Leucine-rich repeat profile. 394 415 IPR001611 GO:0005515
Bda07g00105 530 ProSiteProfiles Leucine-rich repeat profile. 262 283 IPR001611 GO:0005515
Bda07g00105 530 ProSiteProfiles Leucine-rich repeat profile. 308 329 IPR001611 GO:0005515
Bda07g00105 530 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 5 12 528 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00105 - - - jre:108994068 654.825
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00105 Bda-Chr7:1289622 Bda07g01633 Bda-Chr7:30354539 7.27E-53 dispersed
Bda07g00105 Bda-Chr7:1289622 Bda09g00704 Bda-Chr9:11201097 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g647 . . . . . . Bma07g00954 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g00105 . . . . . . . Cmo19g00475 . . . . . Cpe15g00356 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006201 2 1 3 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00105 Bda_Chr07 FPKM 1.058058 1.311821 1.015185 0.594031 0.0 0.22648 0.0 0.0 0.0