Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00113 ATGTCTTCCCCTCCAAAGAAGACAACGAAACCTAAACCCGAATCCTCGACGAAAACTTTCTCTTCTTCTTTCTCAGCCTCTTTGGCGTCGCTGCCGTCTCTGCCGTCTCTGCCGGAGCCGCCTCAGAGTATTTTCCCTTCGAAGGATGATTTTTCTAAGCTTGTAGCCGTGGTTGCCATTGCGTCAGTGGTTGCCGTTTGCTGTAACATCTTCTACTCCATTTTCATGAATATCCAGCCCAAGCCCTTCTGCAACAGCGATGTGGACTCCTTGTATGGGATTGACAGTTATTGCGAGCCTTGTCCGAGTAATGGAGTGTGTTCTGATGGAAAGTTCGAATGTCTTGATGGTTATAGAAAGTACGGAATGTCTTGTGTAGAAGATGGAATAATTAGTGAAACAGCTAAGAAACTTTTTGAATTGGTCAAATTTCATCTTTGTGAAGCAAATGCTGAAGTTTTATGTGATGGAGCTGGAAACGCCTGGTTTGGAGAGGATGATTTATGGAATGGAACGGATGGAAATGCTCTTATTAGTAATATTGTCTCTGACAATATATCTACACGTGTAAAACAAAGAGCAATGGAAATTATTGGAATATCGTTTGAGGCAAGGATCAACTCTCATGGGGTGAAAGAGCTCAAATGTCCTGACTTACTTGCGGAATCTTTCAAACCGTTCCCATGTCGATTTCATCAGTGGATTTCTCAGCATGCTATCTTCATTTTACTGGTTTTCTCGCTGATTGTGGGATTTACATCTCTACTGTGGAAAGTTCATCGTAGATTGCACATATCTGGCAGAGCAGAAGAGCTGTACAATCAGGTATGTGAGTTGCTTGAGGAAAATAGTTTGATGTCAAAGAGAGTCAGCAGCGACATTGACCGTTGGGTTATTGCATCTGTATTACGAGATCATCTTCTTTTGCCAAGAGAGAGGAAGGATCCCGTACTATGGAGAAAGGTTGAGGAATTGGTTCAGTTAGACTCTCGAATAGATCGTTATCCGAAGTTGGTCAAGGGCGAAGCTAAAGAAGTGTGGGAATGGCAAGGTAATAACGTGTCTATCTTAACTAATTTATGTCAGTAG 1089 42.42 MSSPPKKTTKPKPESSTKTFSSSFSASLASLPSLPSLPEPPQSIFPSKDDFSKLVAVVAIASVVAVCCNIFYSIFMNIQPKPFCNSDVDSLYGIDSYCEPCPSNGVCSDGKFECLDGYRKYGMSCVEDGIISETAKKLFELVKFHLCEANAEVLCDGAGNAWFGEDDLWNGTDGNALISNIVSDNISTRVKQRAMEIIGISFEARINSHGVKELKCPDLLAESFKPFPCRFHQWISQHAIFILLVFSLIVGFTSLLWKVHRRLHISGRAEELYNQVCELLEENSLMSKRVSSDIDRWVIASVLRDHLLLPRERKDPVLWRKVEELVQLDSRIDRYPKLVKGEAKEVWEWQGNNVSILTNLCQ 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1364737 1367780 - Bda025173.2 Bda07g00113 9003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00113 362 PANTHER INNER NUCLEAR MEMBRANE PROTEIN HEH2-RELATED 48 352 IPR044780 GO:0003682|GO:0005637
Bda07g00113 362 Gene3D - 254 349 IPR041885 -
Bda07g00113 362 Pfam Man1-Src1p-C-terminal domain 96 351 IPR018996 -
Bda07g00113 362 MobiDBLite consensus disorder prediction 1 21 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00113 - - - cmo:103503505 389.808
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g609 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo03g00827 . Bda07g00113 . . Bpe11g00352 . . . . . . . . . . . Bhi05g00532 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011055 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00113 Bda_Chr07 FPKM 178.797379 188.137207 237.662689 230.753983 86.597084 101.874359 82.855515 280.882812 288.93103