Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00115 ATGGATTCTGAAGAAAGTAACCTCTTCGAGACGGCTTCTCAGCCCGACACGGGCAACGATGCGTACACTTTTCTCGAATTCAATTCACAGGGGGAAGATTTTGATTTCGATGAATTTCGTGATCCCGTCAGATCTTCAATTGCGTGGCCTACACCGTCTGATTCATTGGGGGATGCCGCGGACCGTGGCGGTGGTGCTGGTTCAGATTACCAGTCTGATGCATCACCAGTTTCTGCTCCGTCTGGAAGTGGTACGAAGGGTCGGACCGGTGGGTTGGGTGGAAGTAGTGGGAAAAATCAAGTTGTTGACGCTTTGGTAGCTGGGATGGGTGGGTTGAATTTTGACGATACTGGCGAGGATGATAACTATGGGTTTGGAAAAGGGAATTTCACCGAACATGCTTGCAGATACTGTGGCGTTTCAAACCCAGCTTGCGTCGTTAGGTGCAATGTGCCCTCATGCCGTAAGTGGTTTTGTAATTCGAGGGGGAACACTTCCGGGTCGCATATCGTAAATCATCTTGTTCGAGCAAAACATAAGGAAGTTTGTCTTCATAAAGATAGTGCTTTGGGGGAAACAATTCTTGAATGCTACAATTGTGGATGTCGGAATGTGTTTCTTCTTGGATTCATTTCAGCCAAGACAGAAAATGTGGTCGTCCTTCTTTGCAGAGAACCTTGCTTAAATGTTAATGCATTAAAGGATATGAATTGGGACCTCAGTCAATGGTGCCCCCTGATTGATGATCGTTGTTTTCTTCAATGGTTGGTAAAGGTTCCATCTGAACAGGAGCAGTTGAGGGCTCGCCAGATTAGTGCTCAGCAAATTAATAAGGTCGAAGAGCTTTGGAAGATCAATCCTGATGCTACCCTTGAAGACCTCGAAAAGCCTGGTGTAGATGACGAGCCTCAGCATGTAGTGTTGAAATATGAAGACGCTTATCAGTATCAAAATGTGTTTGCGCCTCTTATCAAGCTTGAAGCTGATTATGATAAAATGATGAAAGAATCTCAGAGCAAGGACAATATTACAATTCGGTGGGATATTGGTCTTAACAAAAAGCGAATAGCGTATTTTGTCTTTCCAAAGGAGGACAATGAACTGCGCCTTGTGCCTGGAGATGAGTTGCGGCTACGTTATTCTGGTGATGCAGCCCATCCAGCATGGCAGTCAGTGGGACATGTTATTAAGCTAACTGCTCAGGAGGAGGTGGCACTGGAGCTACGCGCTAGTCAGGGAGTTCCAGTTGATATAAATCATGGTTTTAGTGTTGATTTTGTGTGGAAGAGTACAAGCTTTGACCGAATGCAGGGAGCAATGAAAACTTTTGCAGTAGATGAGACCAGTGTTAGTGGTTATATCTATCATCATTTGTTGGGCCATGAAGTAGAGGTACAAATGGTTCGCAATACGCTGCCTCGTCGCTTTGGTGCACCTGGGCTACCAGAACTTAATGCATCTCAAGTCTTTGCGGTAAAGAGTGTCCTTCAGAAGCCTATAAGTTTGATTCAAGGTCCACCTGGCACAGGAAAAACAGTTACCTCTGCAGCCATAGTTTATCACATGGCCAAACAAGGCCAGGGGCAGGTTTTGGTTTGTGCACCTAGTAATGTTGCAGTGGACCAACTTGCGGAAAAGATTAGTGCAACAGGATTAAAGGTGGTTAGATTGTGTGCAAAATCAAGGGAAGCTGTAAGTTCGCCAGTTGAGCACTTGACCTTACATTATCAGGTTCGTCATCTGGACACGTCTGAAAAGAGTGAACTGCACAAGTTGCAACAATTGAAAGACGAACAAGGAGAATTGTCCAGTAGTGATGAGAAAAAATACAAAGCGCTAAAACGAGCTACAGAGAGGGAGATATCTCAGAGCGCTGATGTCATTTGCTGCACATGTGTTGGTGCAGGAGATCCTCGGCTATCAAATTTTAGATTTCGCCAGGTACTTATTGATGAATCTACTCAAGCAACGGAGCCTGAATGTCTCATTCCACTAGTTCTTGGAGTAAAGCAGGTTGTTCTTGTTGGAGATCATTGCCAGCTTGGTCCTGTCATTATGTGTAAGAAAGCAGCTCGAGCTGGTCTAGCACAGTCGCTTTTTGAACGACTTGTTCTTCTTGGTGTAAAACCCATAAGGTTGCAGGTTCAATACCGTATGCATCCATCTCTGTCAGAGTTTCCTTCTAATAGCTTTTATGAAGGTACACTTCAAAATGGAGTGACCATAAATGAAAGGCAAACATCGGGCATTGATTTCCCTTGGCCTGTGCCTAATCGTCCCATGTTCTTTTATGTCCAGATGGGACAAGAAGAGATAAGCGCCAGCGGAACGTCTTATTTAAATAGGACTGAGGCTGCAAATGTTGAGAAAATTGTTACTACTTTCTTAAGGAGCGGTGTGGTTCCCAGCCAGATCGGCGTTATAACACCATATGAGGGACAAAGAGCTTATATTGTGAACTACATGTCACGGAACGGTGCTCTCAGGCAGCAGCTTTACAAAGAAATTGAGGTTGCAAGTGTCGACTCTTTTCAAGGAAGGGAGAAGGATTACATTATTCTTTCATGCGTTCGGAGTAATGAACATCAGGGGATTGGATTCCTTAATGATCCTCGTAGGCTTAATGTTGCATTGACCCGAGCAAGATATGGCATTGTCATTCTTGGGAACCCCAAAGTTTTGAGCAAACAGCCCCTTTGGAATGGTCTATTGACACATTATAAGGAACATGAGTGCTTGGTCGAAGGGCCTCTGACTAACTTGAAGCAGAGTATGGTTCAGTTTCAAAAACCCAAAAAGATCTACAATGATCGACGACTTTTCTTTGGTGGAGGACCTGGGATGGTATCTGATGATACTTTCAGTTCTAGTAATGCATCTGGTCTGAATTCTGATAGAAGAAGCAACCGCAGTAGGGGTACCTACATCACTCCTGGCCCACCTAATGGCACTCACAAGCCTGCTACAAACCCTACTGGATATCCTCTGCCTCGAGTTCCCCTTCCCCCATTTCATAGTGGTGCTTCTCAGCCATATGCTATACCAAGTCGTGGAGCTGTACATGGACCAATTGGTGCTGTTCCTCATGTTCCTCCTTCCGGAAGTAGGGGTTTTGGTACTGGTCGTGGCAGCACTGGCAGTCCTATTGGCAGTCATCTCCCACACCAGCAAGGGCCACAACAGACAATAGGAAATATTGGTTCTTCTTTCAACTTCCCTCCCTTGGAGAATTCAAACAGCCAGCCATCTGTGGTTGGTCCATTATCTCAACCTGGATTTGTTAACACTTTGCCAGTTCAAGGGCCAAGCCAAGTATTTCGTGATGGATTTACAATGGGAGGCATGTCACAGGACTTTTTGGGTGATGATTTTAAAAGTCAAGGATCACATGTTCCTTACAATATCACTGACTTTTCCGCACAAACCTCTCCAAGTGCATACAATATTGATTATACTCAAGGTCCACAAAGTGGGTTTCAAGGGAGCTTTCTGAACCAGAACTCTCAAGCTGGATATTCTCGTTTTGGAAGTGGGAATGAGTTTATGCCTCAGGACTACATTGCTCATGGCTCACAAGGCTTATTCAGTCAGGTGGGCTTTAATGATCCTACACCAGATGATGCTTCACAAAACCAGTTTGGTGGTCCCAACGCCACCCCACTCCATTCTCAGGGTTTGATGAATTCTCTTTACTCTCAGCCTTTTGCCCACTACAACACTCCGTCTCTCAATCTAGCTTCCACGCAACAGCAGCCTTCACCATCTCAGGGCTCCCAAAATCAGAAGGTTCATTACAACGGTTGA 3804 45.08 MDSEESNLFETASQPDTGNDAYTFLEFNSQGEDFDFDEFRDPVRSSIAWPTPSDSLGDAADRGGGAGSDYQSDASPVSAPSGSGTKGRTGGLGGSSGKNQVVDALVAGMGGLNFDDTGEDDNYGFGKGNFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSALGETILECYNCGCRNVFLLGFISAKTENVVVLLCREPCLNVNALKDMNWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKINPDATLEDLEKPGVDDEPQHVVLKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNITIRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQTSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLTNLKQSMVQFQKPKKIYNDRRLFFGGGPGMVSDDTFSSSNASGLNSDRRSNRSRGTYITPGPPNGTHKPATNPTGYPLPRVPLPPFHSGASQPYAIPSRGAVHGPIGAVPHVPPSGSRGFGTGRGSTGSPIGSHLPHQQGPQQTIGNIGSSFNFPPLENSNSQPSVVGPLSQPGFVNTLPVQGPSQVFRDGFTMGGMSQDFLGDDFKSQGSHVPYNITDFSAQTSPSAYNIDYTQGPQSGFQGSFLNQNSQAGYSRFGSGNEFMPQDYIAHGSQGLFSQVGFNDPTPDDASQNQFGGPNATPLHSQGLMNSLYSQPFAHYNTPSLNLASTQQQPSPSQGSQNQKVHYNG 1267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1372310 1383920 + Bda025175.2 Bda07g00115 9005

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00115 1267 MobiDBLite consensus disorder prediction 71 96 - -
Bda07g00115 1267 Pfam RNA helicase UPF1, 1B domain 338 427 IPR040812 -
Bda07g00115 1267 MobiDBLite consensus disorder prediction 1244 1267 - -
Bda07g00115 1267 MobiDBLite consensus disorder prediction 952 1060 - -
Bda07g00115 1267 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 109 1013 - -
Bda07g00115 1267 Pfam Type III restriction enzyme, res subunit 487 562 IPR006935 GO:0003677|GO:0005524|GO:0016787
Bda07g00115 1267 MobiDBLite consensus disorder prediction 1 26 - -
Bda07g00115 1267 Gene3D - 718 929 IPR027417 -
Bda07g00115 1267 MobiDBLite consensus disorder prediction 952 978 - -
Bda07g00115 1267 PANTHER DNA2/NAM7 HELICASE FAMILY 109 1013 IPR045055 -
Bda07g00115 1267 Pfam AAA domain 696 891 IPR041679 -
Bda07g00115 1267 Gene3D - 339 427 - -
Bda07g00115 1267 MobiDBLite consensus disorder prediction 44 97 - -
Bda07g00115 1267 Gene3D - 569 621 - -
Bda07g00115 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 912 IPR027417 -
Bda07g00115 1267 CDD SF1_C_Upf1 719 908 IPR041679 -
Bda07g00115 1267 CDD ZBD_UPF1-like 134 256 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Bda07g00115 1267 CDD DEXXQc_UPF1 483 718 - -
Bda07g00115 1267 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 492 624 IPR014001 -
Bda07g00115 1267 Pfam AAA domain 586 686 IPR041677 GO:0004386
Bda07g00115 1267 MobiDBLite consensus disorder prediction 1038 1060 - -
Bda07g00115 1267 CDD 1B_UPF1-like 339 426 IPR040812 -
Bda07g00115 1267 MobiDBLite consensus disorder prediction 1199 1225 - -
Bda07g00115 1267 Pfam RNA helicase (UPF2 interacting domain) 133 286 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Bda07g00115 1267 Gene3D - 447 717 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00115 K14326 UPF1, RENT1; regulator of nonsense transcripts 1 [EC:3.6.4.13 5.6.2.3] - qlo:115972376 2262.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g00115 Bda09g00693 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00115 Bda-Chr7:1372310 Bda09g00680 Bda-Chr9:10556829 0 dispersed
Bda03g00877 Bda-Chr3:7595146 Bda07g00115 Bda-Chr7:1372310 6.95E-47 transposed
Bda07g01561 Bda-Chr7:28979576 Bda07g00115 Bda-Chr7:1372310 1.38E-06 transposed
Bda15g00086 Bda-Chr15:3078779 Bda07g00115 Bda-Chr7:1372310 3.90E-26 transposed
Bda15g00461 Bda-Chr15:7693408 Bda07g00115 Bda-Chr7:1372310 7.01E-14 transposed
Bda05g01057 Bda-Chr5:59057806 Bda07g00115 Bda-Chr7:1372310 1.86E-51 transposed
Bda07g00115 Bda-Chr7:1372310 Bda09g00693 Bda-Chr9:10916528 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g599 . . . . . . Bma07g00979 Bma14g00130 Cmo06g00686 Cmo16g01137 . . . . . Cpe14g00898 . Bhi11g00106 . . . . Mch10g1617 . Cla10g00190 Cam10g0195 Cec10g0201 Cco10g0202 Clacu10g0199 Cmu10g1044 Cre10g0450 Cone8ag0446 Cone12ag0435 . . Lsi07g01234 . . Cme06g02503 Blo03g00825 Blo19g00160 Bda07g00115 Bda09g00693 Bpe08g00863 Bpe11g00354 . . . . . Cma06g00659 Cma16g01087 . Car16g01029 . . . . . . . . . . . . . . . . . Csa03g00208 Chy06g02112 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004846 3 2 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00115 Bda_Chr07 FPKM 222.069733 226.907333 227.139053 209.314514 253.687927 298.663422 239.114151 190.022903 187.387115