Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00129 ATGAAGTTTATTATGGAACTCATTCGGCTCAGTGAACCTCTTAATGAGAAAGTTTTGATTTTCAGCCAATATCTTGAGCCTTTGTCCTTCATAAGGGAACACTTGGAATCACATTTTAGATGGAGTGAAGGCAAAGAGGTGTTATGCATGGATGGAAACCGTAATATAAAGATGCGACAAAATTCAATCAATATTTTTAATGATCCAACTAGCGAAGCAAGAGTATTACTGGCATCAACAAGGGCTTGCTCTGAAGGTATAAATCTGGTTGGAGCTTCAAGGGTAGTTTTACTTGATGTTGTATGGAATCCATCTGTTGAAAGACAAGCTATTTGTCGTGCTTACCGACTAGGCCAAGAAAAACTCGTATATACCTATCATCTCATTGCATCAGGGACTGGAGAAGGTGACAAATACGATAGACAAGTGGAGAAAGATCGTATTTCAGAGATGGTTTTCTCGTCTTCGGCTAAGTACCAGGAAGTCTCACCTTCAGTTTTGGATGATAAAATATTGGAGGCTATGGTTGTATCTGATAAGATCAAACATATATTTAAAAACATTAGGCATGTATCAAAGGAGTCGAATTTAATTGAGAATTTTGGGTTGGTGGAAAAGCAGGGAGACCAATCTTCACCATCTTGA 645 38.14 MKFIMELIRLSEPLNEKVLIFSQYLEPLSFIREHLESHFRWSEGKEVLCMDGNRNIKMRQNSINIFNDPTSEARVLLASTRACSEGINLVGASRVVLLDVVWNPSVERQAICRAYRLGQEKLVYTYHLIASGTGEGDKYDRQVEKDRISEMVFSSSAKYQEVSPSVLDDKILEAMVVSDKIKHIFKNIRHVSKESNLIENFGLVEKQGDQSSPS 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1633263 1633907 + Bda025194.1 Bda07g00129 9019

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00129 214 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 202 IPR044567 GO:0080188
Bda07g00129 214 Gene3D - 1 207 IPR027417 -
Bda07g00129 214 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 1 202 - -
Bda07g00129 214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 156 IPR027417 -
Bda07g00129 214 CDD SF2_C_SNF 1 129 - -
Bda07g00129 214 Pfam Helicase conserved C-terminal domain 6 118 IPR001650 -
Bda07g00129 214 SMART helicmild6 29 118 IPR001650 -
Bda07g00129 214 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 6 165 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00129 K10875 RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] - jre:109003751 278.485
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g00129 Bda09g00688 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00129 Bda-Chr7:1633263 Bda09g00688 Bda-Chr9:10776701 1.04E-98 dispersed
Bda07g00129 Bda-Chr7:1633263 Bda09g00676 Bda-Chr9:10387762 1.98E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g573 . . . . . . . . . . Cma02g01579 . Car02g01343 . . . Cpe05g00211 . . . . . . . . . . . . . . Cone8ag0437 Cone12ag0422 . . . . Chy04g00035 . . . Bda07g00129 Bda09g00688 Bpe08g00872 Bpe11g00360 . . Sed01g4061 Cmo02g01621 Cmo19g00395 . . . . . . Bhi05g00566 Tan07g1908 Cmetu04g1824 Lac11g2350 Hepe06g1725 . . Cla09g01200 Cam09g1268 Cec09g1282 Cco09g1316 . . Cre09g1228 . Csa03g04668 . Cme04g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005251 3 2 0 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 3 1 1 1 2 1 1 40