Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00133 ATGAAGAAGCATCAGAAAAGGAGTGGCGGAGGGGATGATCTTCTTCTCCACACGGCTGCCAGAAATGGCGATATCAGTTCCATCATCTCCATCTTAGCGTCTAATTCTTCTCTCGTCAATTTTAGAGATAAGCATTCTCGAACACCACTACATTTAGCAGCATGGTCAGGTAAAACAGAGGCTGTAGATTATCTTTGCAAGAACAAGGCTGATGTTGGTGCTACCGCCATGGATGATATGGGAGCGATTCATTTTGCTTCTCAAAAGGGACATTTAGATGTTGTCCGGGCTCTAGTTTCATTTGGGGGGTCTGTCAAAGCTTCTACTCGCAAAGGCATGACTCCATTACACTACGCCGTTCAAGGGTCTTATCTTGAGCTCGTGAAGTATTTGGTCAAGAAAGGTGGAAGTCTTACCACCAAGAGTAAAACCGGGATGACTCCCCTTGATCTTGCTTCCAATGAAGAAATTCGCTCCTTTTTGGAAGAGTCGGAACTATTGCCTAAGAAAAAAGATCTTAATGAGAAAAATAATGATGAAAATCCCGAGGCAAAACCATCGATTTCTGATAGAGAAGAGAGTTCTGGTGTCGGAATAACTGAGGCTGGAGTTGATGAACAACCGGATGGCGAAAAGTTGAAGAGAAAGAGCGATGAAGATGGAGTGCAGGAAGCTTCTTCTGGACGAAAAAAGGCGAAAGTTTCCCTCAATCATCTTCTCAGTGCAGATGACACAGAAGCTGAAGAAAACTCCTGA 756 43.92 MKKHQKRSGGGDDLLLHTAARNGDISSIISILASNSSLVNFRDKHSRTPLHLAAWSGKTEAVDYLCKNKADVGATAMDDMGAIHFASQKGHLDVVRALVSFGGSVKASTRKGMTPLHYAVQGSYLELVKYLVKKGGSLTTKSKTGMTPLDLASNEEIRSFLEESELLPKKKDLNEKNNDENPEAKPSISDREESSGVGITEAGVDEQPDGEKLKRKSDEDGVQEASSGRKKAKVSLNHLLSADDTEAEENS 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1677497 1680030 + Bda025198.1 Bda07g00133 9023

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00133 251 PANTHER ANKYRIN REPEAT PROTEIN 12 249 - -
Bda07g00133 251 Pfam Ankyrin repeats (3 copies) 15 75 IPR002110 GO:0005515
Bda07g00133 251 Pfam Ankyrin repeats (3 copies) 83 163 IPR002110 GO:0005515
Bda07g00133 251 SUPERFAMILY Ankyrin repeat 15 177 IPR036770 -
Bda07g00133 251 SMART ANK_2a 45 74 IPR002110 GO:0005515
Bda07g00133 251 SMART ANK_2a 78 107 IPR002110 GO:0005515
Bda07g00133 251 SMART ANK_2a 11 40 IPR002110 GO:0005515
Bda07g00133 251 SMART ANK_2a 111 140 IPR002110 GO:0005515
Bda07g00133 251 MobiDBLite consensus disorder prediction 168 251 - -
Bda07g00133 251 PANTHER - 12 249 - -
Bda07g00133 251 ProSiteProfiles Ankyrin repeat region circular profile. 111 143 - -
Bda07g00133 251 ProSiteProfiles Ankyrin repeat region circular profile. 45 72 - -
Bda07g00133 251 ProSiteProfiles Ankyrin repeat region circular profile. 78 107 - -
Bda07g00133 251 MobiDBLite consensus disorder prediction 168 190 - -
Bda07g00133 251 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Bda07g00133 251 MobiDBLite consensus disorder prediction 205 227 - -
Bda07g00133 251 Gene3D - 12 181 IPR036770 -
Bda07g00133 251 ProSiteProfiles Ankyrin repeat profile. 111 143 IPR002110 GO:0005515
Bda07g00133 251 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00133 - - - pop:18094063 294.664
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00133 Bda-Chr7:1677497 Bda10g01076 Bda-Chr10:44745929 6.64E-07 dispersed
Bda07g00133 Bda-Chr7:1677497 Bda10g01061 Bda-Chr10:44640053 8.61E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g894 . . . . . . . Bma14g00116 . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0531 . . . . . . . Blo03g00846 . Bda07g00133 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013469 1 1 1 1 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00133 Bda_Chr07 FPKM 5.681433 5.989968 2.586183 3.050913 1.891934 1.913012 1.805001 1.625831 1.846745