Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00148 AAAGGGAGAGAGACAGAGAGAGCTTCAAAAGCTATGGCAGCCATGGAGATTGCTAAAAAAGAGATCGAGGGGACAGAGAAACCGAATAAGCAAGCAGAAGAATCATCGGAGAAGATGGGTTTCAAGAGACTGGAACCTTGGACGAAACAACTAACAGTGAGGGGAGTTTTCGTAAGCGTTGTTCTTGGAGTGGTGTACAGCATAATTGTCATGAAATTAAACCTAACGACTGGGATAGTTCCCAATCTTAACGTCTCAGCTGCTCTTCTTGCCTTCCTGTTCATCCGAACATGGACCCAAACTCTCCAGAAAGCTGGTTTTCTCTCTAAACCCTTCACCCGGCAGGAGAACACGATGATCCAAACTTCTGTCGTTGCATGTTATAGCATTGCTATCGGAGCTACGAATGTGGTGGAAAACTCCATTGAAGACTTGAAGCAAGATGAAACCTTCCTGAGAGAAAACATTCCGATGTGGATTGGAGTAGTTGGATACTTGATCTTCTCGACCATATCAACCATTGTAGTACCCATAATTTTCCCACAGTTGAAATGGTATTTTGTAGTTGTAGCTTACATTCTAGCTCCATCTCTGGCCTTCTGCAACGCCTATGGAGCAGGTTTAACTGACATAAACATGGCCTACAACTACGGAAAGGTGGGTCTCTTCGTGATCGCCGCCTTCAGCGGCAAAGAAAATGGGCTGATGGCCGGTCTGGCCGGCTGCGGCATCGTGAAATCGGTGCTTTCGGTGGCTTGTATTCTCATGCAGGATTTCAAAACGGCCCACCTGACCTACACTTCGCCGAGAGCCATGTTTACGAGCCAAGCGATCGGAGCGGTGCTCGGCTGCCTGACCGCCCCGCTCAGCTTCTTTCTGTTCTACAAGGCGTTCGACATCGGAAATCCCGACGGAGAATTCAAAGCTCCATATGCTCTGATCTACAGAAACATGGCCATTCTGGGTGTCGAAGGCTTCTCGGCTCTCCCCCTTCATTGCCTGCAGCTCTGCTACGGCTTCTTCGCTTTTGCAGTGGCGGTGAACATAGTGAGGGACCATTTTCCGACGATCGGAAAGTGGATGCCGCTGCCGATGGTGATGGCGGTGCCGTTTTTGGTGGGTGCTTATTTTGCGATTGACATGTGTCTGGGGAGTTTGATAGTGTTTGTGTGGACCAAACTGAATAAAGAGATGGCTGATTTCATGGTTCCGGCGGTGGCTTCCGGCTTGATCTGTGGGGAGGGGCTTTGGACGCTTCCGGCGTCGATTCTTGCTCTGGCCAAAGTAAATCCTCCGATCTGCATGAAATTTTTGGCTTCTTAG 1323 49.13 KGRETERASKAMAAMEIAKKEIEGTEKPNKQAEESSEKMGFKRLEPWTKQLTVRGVFVSVVLGVVYSIIVMKLNLTTGIVPNLNVSAALLAFLFIRTWTQTLQKAGFLSKPFTRQENTMIQTSVVACYSIAIGATNVVENSIEDLKQDETFLRENIPMWIGVVGYLIFSTISTIVVPIIFPQLKWYFVVVAYILAPSLAFCNAYGAGLTDINMAYNYGKVGLFVIAAFSGKENGLMAGLAGCGIVKSVLSVACILMQDFKTAHLTYTSPRAMFTSQAIGAVLGCLTAPLSFFLFYKAFDIGNPDGEFKAPYALIYRNMAILGVEGFSALPLHCLQLCYGFFAFAVAVNIVRDHFPTIGKWMPLPMVMAVPFLVGAYFAIDMCLGSLIVFVWTKLNKEMADFMVPAVASGLICGEGLWTLPASILALAKVNPPICMKFLAS 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1809387 1812958 + Bda025215.1 Bda07g00148 9038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00148 440 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 139 439 IPR045035 GO:0035673
Bda07g00148 440 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 19 134 IPR045035 GO:0035673
Bda07g00148 440 PANTHER METAL-NICOTIANAMINE TRANSPORTER YSL1 19 134 - -
Bda07g00148 440 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 150 425 IPR004813 GO:0035673
Bda07g00148 440 Pfam OPT oligopeptide transporter protein 50 138 IPR004813 GO:0035673
Bda07g00148 440 Pfam OPT oligopeptide transporter protein 142 424 IPR004813 GO:0035673
Bda07g00148 440 PANTHER METAL-NICOTIANAMINE TRANSPORTER YSL1 139 439 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00148 - - - pvy:116120879 522.702
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00148 Bda-Chr7:1809387 Bda10g00255 Bda-Chr10:26477316 1.80E-36 dispersed
Bda07g00148 Bda-Chr7:1809387 Bda07g01951 Bda-Chr7:36934946 1.08E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g231 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0553 Cone12ag0552 . . . Csa05g00170 Chy09g01328 . Blo03g00808 . Bda07g00148 . . Bpe11g00365 . . . . . . . . . . . Bhi12g00092 . . . . . Lcy12g1527 . . . . . . . Lsi09g00142 . . Cme09g01875
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0032259 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00148 Bda_Chr07 FPKM 6.250432 6.47676 26.279381 28.128731 8.991192 5.727454 10.608884 28.004572 28.504503