Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00149 ATGACGACGGGAAACGCCGGAGAAGAAGAGCGTGCCGGAGCAGAGATTGCGTACGGCCCCGAGGAATGCTTCCGCCGATCGTTGGAGCTTCTTGAAGAATTGGGATTTCCTGGTGGCGTTCTGCCATTGCAGGACCTCGAAGAATGTGGACGAGTGAGAGAGACTGGGTTCGTTTGGATGAAACAGAAGCAGCCCTATGAGCATTTCTTCACCGGAAGTAACACCAGGGTCAGCTATGCGACGGAGGTCACGGCCTACGTAGAAAAGTTCAGGATGAAAAAGATGACTGGAATCAAAAGCAAGCAGCTTTTTCTGTGGGTTCCGATCTCCGAGATGAGCATTGAAGATCCAGCCAGCCGGAAGATCTATTTCAAGACTCCGATGGGGATCGGAAAATCGTTCCCGGTGACTGCATTTATGTCCGATGAGGAGAAGCGCAAGTATTTGGAGAAGGTCAAGGAGTGA 465 51.4 MTTGNAGEEERAGAEIAYGPEECFRRSLELLEELGFPGGVLPLQDLEECGRVRETGFVWMKQKQPYEHFFTGSNTRVSYATEVTAYVEKFRMKKMTGIKSKQLFLWVPISEMSIEDPASRKIYFKTPMGIGKSFPVTAFMSDEEKRKYLEKVKE 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1814192 1814656 + Bda025216.2 Bda07g00149 9039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00149 154 Pfam Protein of unknown function, DUF538 29 139 IPR007493 -
Bda07g00149 154 Gene3D - 9 149 IPR036758 -
Bda07g00149 154 PANTHER T19F6.7 PROTEIN 7 152 - -
Bda07g00149 154 PANTHER T31J12.3 PROTEIN-RELATED 7 152 IPR007493 -
Bda07g00149 154 SUPERFAMILY At5g01610-like 10 145 IPR036758 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00149 - - - tcc:18605980 254.988
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00291 Bda-Chr6:4871264 Bda07g00149 Bda-Chr7:1814192 2.23E-37 dispersed
Bda07g00149 Bda-Chr7:1814192 Bda07g01138 Bda-Chr7:13518078 1.36E-06 dispersed
Bda07g00149 Bda-Chr7:1814192 Bda07g01306 Bda-Chr7:15882816 9.70E-46 transposed
Bda07g00149 Bda-Chr7:1814192 Bda08g01119 Bda-Chr8:27556593 7.42E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g236 . . . . . . . Bma14g00104 . . . Cma15g01313 . Car15g01181 . . . . . . . . . . . . . . . . . . Cone12ag0554 . . . Csa05g00168 Chy09g01330 . Blo03g00807 . Bda07g00149 . . Bpe11g00366 . . . . Cmo15g01378 . . . . . . Bhi12g00090 . . Lac11g1929 Hepe06g1440 . Lcy12g1526 Cla01g00149 Cam01g0154 Cec01g0150 Cco01g0156 Clacu01g0149 Cmu01g0149 Cre09g2357 Lsi09g00140 . . Cme09g01878
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011678 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00149 Bda_Chr07 FPKM 0.0 0.0 0.426393 0.374904 67.471992 69.669357 65.618546 0.0 0.0