Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00161 ATGGATTTTGGATTTGGTGAAGAGAGAGGTAAGTTACCTTTTTCATACTCCTCTTCCTCTTCCTCTCCTTCCTCTTCTTCGCAGTACAAAACAGCCAATCTGATACCTCTAGGCAACAATGAAAGCTGGGAGTCTCGTCTTTACAACAACTACCAGCAGCAGCCGAGAGGGTTTGAGGTGATGGCTGCGAACGACGAAGTAATGGAGAGGTATGGAGATTCAGACGGCCATGGGAGTCGAGGAAGGTTTTGTATGGAGAAGGAGCACATGTTCGACAAAGTTGTCACCCCTAGCGACGTCGGAAAACTGAATCGGCTGGTAATTCCGAAACAGCACGCAGAAAAGTATTTTCCTCTTGATTCATCCACCAACGAGAAAGGTCTCCTCCTAAATTTCGAAGATCGGAATGGAAAGCCATGGCGATTCCGGTATTCGTACTGGAATAGCAGCCAAAGCTACGTTATGACAAAAGGATGGAGCCGGTTTGTCAAGGAGAAGAAGCTAGACGCAGGCGACATTGTGTCCTTCCAGCGTGGAGTTGGGGAGGCGGGAAAAGACCATCTTTACATTGACTGGCGGCGCCGCCCAGATGCGCCTGAACCAGCAGCGACGCTTGGTGGAAACATAGCACTAATTCCACACCAATTCGCATTCCACCACCACCATTCATTCGCTTGGAGCCCTTTGCTCCTCCGCTCCATGCCGACTGCAACGTCCTTGTCTATGCCGCGGGACCACTTGCACTTGTCGCACTTAAACAACAATGTCGTCCACAGAGGAGGTTCCGCCGTTTACGGTGATGTGATGAACCCAAACCCACATCCAAATTGCTCAAACCGGTCGATTGTTTACTTTAGGTCGGCACCAGCAGGGCCACAAGCGCAGCCATTGGGGGCGGCGCAAGTTCAACAGGGAGGTGGAGTGGAGCAGGATGGTGTTTGA 942 51.06 MDFGFGEERGKLPFSYSSSSSSPSSSSQYKTANLIPLGNNESWESRLYNNYQQQPRGFEVMAANDEVMERYGDSDGHGSRGRFCMEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGEAGKDHLYIDWRRRPDAPEPAATLGGNIALIPHQFAFHHHHSFAWSPLLLRSMPTATSLSMPRDHLHLSHLNNNVVHRGGSAVYGDVMNPNPHPNCSNRSIVYFRSAPAGPQAQPLGAAQVQQGGGVEQDGV 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1999022 1999963 + Bda025230.1 Bda07g00161 9051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00161 313 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 63 218 IPR044800 GO:0003700
Bda07g00161 313 MobiDBLite consensus disorder prediction 13 31 - -
Bda07g00161 313 Gene3D - 84 202 IPR015300 -
Bda07g00161 313 SUPERFAMILY DNA-binding pseudobarrel domain 88 196 IPR015300 -
Bda07g00161 313 CDD B3_DNA 89 190 IPR003340 GO:0003677
Bda07g00161 313 MobiDBLite consensus disorder prediction 1 31 - -
Bda07g00161 313 ProSiteProfiles B3 DNA-binding domain profile. 91 196 IPR003340 GO:0003677
Bda07g00161 313 Pfam B3 DNA binding domain 91 195 IPR003340 GO:0003677
Bda07g00161 313 MobiDBLite consensus disorder prediction 293 313 - -
Bda07g00161 313 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 63 218 - -
Bda07g00161 313 SMART B3_2 91 196 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01650 Bda-Chr3:55852070 Bda07g00161 Bda-Chr7:1999022 5.27E-49 dispersed
Bda05g01144 Bda-Chr5:59629321 Bda07g00161 Bda-Chr7:1999022 2.74E-47 dispersed
Bda07g00161 Bda-Chr7:1999022 Bda08g00078 Bda-Chr8:721686 3.92E-63 dispersed
Bda07g00161 Bda-Chr7:1999022 Bda03g01027 Bda-Chr3:9739224 5.29E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16081 PF02362 B3 1.90E-29 CL0405 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00161 - - pop:18103453 296.975