Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00164 ATGGACCTGGGCCATATTATGGACGCCCACCCCGGCCAAACCGACCCTTCAGGAAGCTCTCCGCCTTCTCGGAGCGATAATTTTGTTGTCTCATCTGACCAGGAGCAGATGAAGGCACCGGATAAGTCGCTGGACTTTATAATCGACGCAGCTTCTGGTGATCATCCATTTGATCCATACCTGTCTCTGTTGAAGACGAATGGTGTTATGGTCCTCGTGGGTTTTCCTAGGGAAGTGAAGTTCAGCCCTGCAAGCCTTAATTTAGGTATGAAAACAATTTCTGGTAGCATAACCGGTGGGACGAAGGTGACACAAGAGATGATCGATTTCTGCGCGGCCAATGGAATCGATCCTAATGTAGAAGTGGTCCAATTCAGTACTCAAATGAAGCTATTGAAAGGGTTATAA 408 47.55 MDLGHIMDAHPGQTDPSGSSPPSRSDNFVVSSDQEQMKAPDKSLDFIIDAASGDHPFDPYLSLLKTNGVMVLVGFPREVKFSPASLNLGMKTISGSITGGTKVTQEMIDFCAANGIDPNVEVVQFSTQMKLLKGL 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2044506 2045200 - Bda025234.1 Bda07g00164 9054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00164 135 MobiDBLite consensus disorder prediction 13 37 - -
Bda07g00164 135 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 39 117 IPR036291 -
Bda07g00164 135 Gene3D - 26 118 - -
Bda07g00164 135 PANTHER - 25 126 - -
Bda07g00164 135 MobiDBLite consensus disorder prediction 1 37 - -
Bda07g00164 135 PANTHER ALDEHYDE REDUCTASE 25 126 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00164 K00083 CAD; cinnamyl-alcohol dehydrogenase [EC:1.1.1.195] - rcu:8278489 165.236
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00164 Bda-Chr7:2044506 Bda08g01193 Bda-Chr8:48038839 6.11E-22 dispersed
Bda07g00164 Bda-Chr7:2044506 Bda07g00166 Bda-Chr7:2051097 2.27E-64 proximal
Bda07g00164 Bda-Chr7:2044506 Bda09g00624 Bda-Chr9:9143197 2.96E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g287 . . . . . . Bma07g01051 Bma14g00086 . . Cma02g00962 . Car02g00709 . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01356 . Blo03g00785 . Bda07g00164 . Bpe08g00918 . . . . Cmo02g00969 . . . . . . . Bhi12g00056 . . Lac11g1844 Hepe06g1407 . Lcy12g1474 . . . . . . . . . . Cme09g01902
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024519 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00164 Bda_Chr07 FPKM 1.530726 1.397315 0.0 0.0 3.495412 3.182014 0.0 1.448822 0.944792