Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00233 ATGGATACCCATGTCCATAGCCTACCTCCTCTCAAACGATTCCGCATTCTGCAACATCAGCGAGAAGAATTCAATGGAGAACGAAGATCGGAACTAGGGCTAGCCGATAGCTCCGTTGACTCGCTTTCCCTTCCGGCGAAGAAGCGAAAAGAGTCTCGAGAATCGACTCCTGCGGATTCTGCCGCCGCCAGAACTGCTGCTCGCACCTCCACCTATTTCCTTCCGGCCAAAAAAAGGATATGGGCCGTTCAGCCAGATTTCGCACTGGAACATGGTTATCTACCATTTGATCTTAATATCGAATATCAACCGCAAATGGAGGAAGTAGTAGAAAAAATATCAGCAAAAGACACCAGTGATGAGAAAGAGGAAAAGAAAACCCCAACTCCGGCCTATGAAATTGAAGAAATCGATCGAATCAAGGAATGTAAAGAATATGAAAAGGAAGCAAACGAGGAAGAAGAAGATGACGGAATTCTCTGTGCAGTTTGTCAAAGCACAGACGGAGATCCATCAGATCCAATCGTCTTCTGTGATGGCTGCGATCTAATGGTCCACGCTTCCTGTTATGGAAACCCATTACTGAAACAGATACCAGAAGGCGACTGGTTTTGTGCCCAATGCTCATCCTCACCTAAAGCTTCTGAAAATGGCGTCTCTTGCAGCCTCTGCCCAACCAAGGGAGGAGCAATGAAGCCAATGAAAGACGGCTCATGGGCTCACATCGTGTGCGTCCTCTTTGTGCCAGAGGCCTTCTTTGAGGATCCAGAAGGGCGAGAAGAGATCAACTGCTCGGCGATTCCGCATAAAAGGTGGGACCAAAAATGCTATATCTGTAAAAGCGGGAGTGGGTGCGCTATTGATTGCTCTGAGCCGAAATGTAGTTTGTCTTTTCATGTTACTTGTGGGTTGAATGAAGATCTTTGTATAGAATACAGAGAGGGGAAAAGAAAGGGTGCTGTCGTTGCTGGTTTCTGCAAACAGCATTCTGAACTTTGGAAGAAGGTAAACATTCTGAACTCTGGTTTTGAAATTTGA 1038 46.24 MDTHVHSLPPLKRFRILQHQREEFNGERRSELGLADSSVDSLSLPAKKRKESRESTPADSAAARTAARTSTYFLPAKKRIWAVQPDFALEHGYLPFDLNIEYQPQMEEVVEKISAKDTSDEKEEKKTPTPAYEIEEIDRIKECKEYEKEANEEEEDDGILCAVCQSTDGDPSDPIVFCDGCDLMVHASCYGNPLLKQIPEGDWFCAQCSSSPKASENGVSCSLCPTKGGAMKPMKDGSWAHIVCVLFVPEAFFEDPEGREEINCSAIPHKRWDQKCYICKSGSGCAIDCSEPKCSLSFHVTCGLNEDLCIEYREGKRKGAVVAGFCKQHSELWKKVNILNSGFEI 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2939096 2940133 - Bda025306.1 Bda07g00233 9123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00233 345 MobiDBLite consensus disorder prediction 25 64 - -
Bda07g00233 345 SMART PHD_3 275 330 IPR001965 -
Bda07g00233 345 SMART PHD_3 160 209 IPR001965 -
Bda07g00233 345 CDD PHD_BRPF_JADE_like 160 208 - -
Bda07g00233 345 Pfam PHD-zinc-finger like domain 220 329 - -
Bda07g00233 345 PANTHER PHD FINGER PROTEINS 2 119 - -
Bda07g00233 345 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 119 - -
Bda07g00233 345 ProSitePatterns Zinc finger PHD-type signature. 161 208 IPR019786 -
Bda07g00233 345 ProSiteProfiles Extended PHD (ePHD) domain profile. 218 330 IPR034732 -
Bda07g00233 345 PANTHER PHD FINGER PROTEINS 120 335 - -
Bda07g00233 345 MobiDBLite consensus disorder prediction 43 57 - -
Bda07g00233 345 ProSiteProfiles Zinc finger PHD-type profile. 158 211 IPR019787 -
Bda07g00233 345 SUPERFAMILY FYVE/PHD zinc finger 148 224 IPR011011 -
Bda07g00233 345 Pfam PHD-finger 161 210 IPR019787 -
Bda07g00233 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 332 IPR013083 -
Bda07g00233 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 215 IPR013083 -
Bda07g00233 345 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 120 335 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00233 Bda-Chr7:2939096 Bda08g00345 Bda-Chr8:3530950 6.26E-24 dispersed
Bda07g00233 Bda-Chr7:2939096 Bda03g00173 Bda-Chr3:1393461 2.54E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16086 PF13832 zf-HC5HC2H_2 1.50E-28 CL0390 Bda TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00233 K11380 - csv:101203744 403.29