Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00265 ATGGAGTGCGAGCTATGTGGGCAGAGAGCGAGGATGTTTTGCGAGTCGGATGAGGCGAGTCTATGCTGGACCTGCGATGAGAAGGTTCACGCCGCTAATTTTCTGGTGGCGAAGCACCATCGGAACCTCTTGTGTAATGTATGTCAGTCTCCGACTCCATGGAATGCTTCTGGACCGAAGCTTACGCCTACTGTGTCAGTATGCGAGAGATGCCTCAATTCTCATGATAGGATCTCCGAGCGTGGTCGAGATCAGGAAAGCCAAGCAGGTAACGAAGTTGAGGATGATGGTAGCTACGATGGAAGTGATAGCGAAGGATACGATGAGGAAAACGAAGAAGAAGATGGGGAAGAGGAAGAGGCGGATGATGGAGATAATCAAGTCGTGCCGTGGTCTCATGCTTCTTCTTCGCCGCCGCCTTCGCCGCCGGCAGCGAGTTCGAGCAGCGAGGGCGTTTGCTCCGGGGGTGATGCTGGAGAGGCATTGAAGCGGAGGAGAGAAATCGGCGACCGTTTTTACTCTGATGTATGGAATCGTCCCTTACTTTGTGATCTTAATTTAGCGGAAGATTAG 573 52.18 MECELCGQRARMFCESDEASLCWTCDEKVHAANFLVAKHHRNLLCNVCQSPTPWNASGPKLTPTVSVCERCLNSHDRISERGRDQESQAGNEVEDDGSYDGSDSEGYDEENEEEDGEEEEADDGDNQVVPWSHASSSPPPSPPAASSSSEGVCSGGDAGEALKRRREIGDRFYSDVWNRPLLCDLNLAED 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3721010 3721582 + Bda025345.1 Bda07g00265 9155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00265 190 MobiDBLite consensus disorder prediction 91 125 - -
Bda07g00265 190 PANTHER OS08G0178800 PROTEIN 2 154 - -
Bda07g00265 190 SMART bboxneu5 1 44 IPR000315 GO:0008270
Bda07g00265 190 CDD Bbox1_BBX-like 3 41 - -
Bda07g00265 190 Pfam B-box zinc finger 2 40 IPR000315 GO:0008270
Bda07g00265 190 MobiDBLite consensus disorder prediction 79 158 - -
Bda07g00265 190 ProSiteProfiles Zinc finger B-box type profile. 1 44 IPR000315 GO:0008270
Bda07g00265 190 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 154 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00265 - - - bhj:120086748 181.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00338 Bda-Chr6:5432118 Bda07g00265 Bda-Chr7:3721010 9.11E-23 dispersed
Bda07g00265 Bda-Chr7:3721010 Bda13g00639 Bda-Chr13:7353320 2.21E-30 dispersed
Bda09g00370 Bda-Chr9:4791984 Bda07g00265 Bda-Chr7:3721010 1.09E-54 transposed
Bda06g00348 Bda-Chr6:5592991 Bda07g00265 Bda-Chr7:3721010 1.57E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g324 . . Bda07g00265 . . . . . . . . . . . . Cpe06g00728 Cpe02g00732 . . . . . . . . . . . . . . Cone6ag0104 Cone9ag0124 . . Lsi04g01267 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000776 4 2 3 3 3 3 3 3 3 3 3 3 4 3 2 4 3 6 4 3 3 3 2 2 2 3 2 3 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16090 PF00643 zf-B_box 5.40E-06 No_clan Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00265 Bda_Chr07 FPKM 1.085983 0.0 0.921354 0.77973 1.032024 0.847706 0.845154 2.016958 1.659543