Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00267 ATGGTAGAGCCTCTGGACCTGCTCCGATCCAATCTCTCTCGCGTTCGGATTCCGGAGCCTACCAATCGTATTTACAAGCAAGAATGCTGCTTGTCTTTTGATACTCCGAGATGCGAAGGAGGGTTGTTCGTTGACATGAACACATTTCTTGCATTTGGCAGAGAGTACGTGGAATGGAATTATGAGAAAACTGGGAATCCAGTGTATTTACATATAAAGCAAACCAAAAAATTGGTTCCGGAAGATAGGCCTTCAAAAAAGCCGACCCTCTTGGGAATAGGCATTGATGGCGGTTTTGACAACAATGAACTAGAATATGAAGAAACGTACAATATAGTGATATTGCCTGATTATGTTGCTCTTCCATTTCCGTCTGTTGAGTTGCCGGAGAAGGTAAGGTTGGCAGTTGATGCTGTCTTAATTGCTGAGGGTGCTGAGAGAAAAGAACAAGTTGCGGCTTGGACAGCTGATAAGAAGCTGATTAGTGCATATGCAATGAACTTACAACAGATTGACAATGGTGTTGTTATCCCTCCATTTGGGTGGCAATGTTCAAAATGTGATAAAACTGAGAATCTTTGGTTAAATTTAACTGACGGAATGATTCTTTGTGGAAGAAAAAATTGGGATGGGACTGGTGGCAATAACCATGCTATGGAGCACTATAAGGAGACTGGCTATCCTCTTGCCGTGAAGTTGGGGACCATTACAGCTGATCTGGAAGCTGCTGATGTGTTTTCTTATCCAGAAGATGACACTGTCTTGGATCCTCATCTAGCACAGCATCTTGCTTTCTTTGGTATTAATTTTTCATCACTTCAAAAGACTGAAATGACCACCGCTGAAAGAGAGCTTGATCAAAATACCAATTTTGACTGGAATCGAATTCAAGAAAGTGGACAGGAGGTGGAACCAATATCTGGACCAGGATACACTGGTCTTGTTAACCTTGGAAATAGCTGCTACTTGGCAGCTACGATGCAAGTTGTGTTTTCAACACGAAGTTTCTGTAGGTGGTACTACATGGACCAACCTTTAAAGAAGGCTTTCAAGATAGCTCCTGCCGATCCAACTGTGGACCTTAATATGCAGTTAACAAAGCTGGCTCATGGTTTGCTGTCCGGTAGATATTCTGCTCCGGTACAAAAGAAATGTGATGATGCTAATTCTACTACCTCACCAGAAAATTCTAAACAGGAAGGCATCCCCCCACGTATGTTCAAAGCAGTTATTGCTCAGAGTCATCCAGAATTTTCTACCATGCGACAGCAGGATGCCTTGGAATTCTTTCTACATTTTCTTGATCAAGTTGAGCGGCTAAAAACTGGTGACGTTGAATTAAGTCCTGCCAGAAGCTTCAAGTTTGGTATTGAGGATCGTATAACGTGTTCTTCTGGAAAAGTTGCTTATAATAGAAGGCTTGACTACATTCTTTCTTTAAATATCCCATTGCATGAAGCTACTAATAAAGAAGAACTTGCAGCCTTTCAAAAGTTAAAAGCAGAAAAAATTTCAGAAGGAAAGAAAATTGAAAACAATGAGATTGTACGTCCAAGGGTGCCTCTTGAAGCTTGCCTTGCAAACTTTTCTACTCCAGAGGAGATTCATGATTTTTACAGTACTGCCTTGCGGGCTAAGACTACAGCAATCAAGACTGCGGGTTTAACTTCATTCCCCGATTACCTGGTGCTGCACATGCGCAAATTTGTCATGGAGGCGGGATGGGTGCCAAAAAAACTAGACGTCTATATAAATGTCCCTGATATCATTGATATTACTCACATGCGGAGCAAAGGACCCCAACCTGGAGAGGAGCTGTTACCAGAAGATGATTCTGGGAATGAGATTGAATCAAATAAGCTGTCAGCCAACGAGGATATTGTTTCCCAGCTAGTCTCAATGGGATTTAACCATCTTCACTGTCAGAAAGCTGCCATTAACACTTCAAATCTTGGAGTGGAAGAGGCAATGAATTGGCTACTTTCCCATATGGACGATTCAGATATAGATGCCCCCATCACTCAAGAAGCAGATGGTGTTGTTGACCAATCTAAACTTGATATGTTGCTTCAATTTGGTTTCCAAGAAGAGGTTGCTAGGAAGGCACTGAAAGCGACGGGGGGTGACATTGAGAAAGCAACTGATTGGATATTTAGCAATCCTGATGCCTCTTTATCATCAGCTATGGATACCACCGCATCATCATCAAACCCTGCATCAACTTCCACAGATGCCATGCTACCAGATGGCGGAGGAAGATACAGACTTATGGGCATTGTTAGCCACATTGGAACCTCTACCCAATGTGGTCACTACGTAGCTCACATCTATAAAGATGGTAGATGGGTTATTTTCAACGACGATAAGGTCGGAGCTTCGGTCAATCCTCCTAAGGACATGGGATATTTATATTTCTTCGAAAGGATCAACAATTAA 2436 42.24 MVEPLDLLRSNLSRVRIPEPTNRIYKQECCLSFDTPRCEGGLFVDMNTFLAFGREYVEWNYEKTGNPVYLHIKQTKKLVPEDRPSKKPTLLGIGIDGGFDNNELEYEETYNIVILPDYVALPFPSVELPEKVRLAVDAVLIAEGAERKEQVAAWTADKKLISAYAMNLQQIDNGVVIPPFGWQCSKCDKTENLWLNLTDGMILCGRKNWDGTGGNNHAMEHYKETGYPLAVKLGTITADLEAADVFSYPEDDTVLDPHLAQHLAFFGINFSSLQKTEMTTAERELDQNTNFDWNRIQESGQEVEPISGPGYTGLVNLGNSCYLAATMQVVFSTRSFCRWYYMDQPLKKAFKIAPADPTVDLNMQLTKLAHGLLSGRYSAPVQKKCDDANSTTSPENSKQEGIPPRMFKAVIAQSHPEFSTMRQQDALEFFLHFLDQVERLKTGDVELSPARSFKFGIEDRITCSSGKVAYNRRLDYILSLNIPLHEATNKEELAAFQKLKAEKISEGKKIENNEIVRPRVPLEACLANFSTPEEIHDFYSTALRAKTTAIKTAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYINVPDIIDITHMRSKGPQPGEELLPEDDSGNEIESNKLSANEDIVSQLVSMGFNHLHCQKAAINTSNLGVEEAMNWLLSHMDDSDIDAPITQEADGVVDQSKLDMLLQFGFQEEVARKALKATGGDIEKATDWIFSNPDASLSSAMDTTASSSNPASTSTDAMLPDGGGRYRLMGIVSHIGTSTQCGHYVAHIYKDGRWVIFNDDKVGASVNPPKDMGYLYFFERINN 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3744726 3751136 + Bda025347.2 Bda07g00267 9157

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00267 811 MobiDBLite consensus disorder prediction 383 402 - -
Bda07g00267 811 SMART uba_6 624 662 IPR015940 -
Bda07g00267 811 SMART uba_6 682 719 IPR015940 -
Bda07g00267 811 CDD Peptidase_C19B 313 807 - -
Bda07g00267 811 Pfam Variant UBP zinc finger 15 77 IPR041432 -
Bda07g00267 811 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 109 IPR013083 -
Bda07g00267 811 MobiDBLite consensus disorder prediction 728 744 - -
Bda07g00267 811 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 622 663 IPR015940 -
Bda07g00267 811 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 14 810 - -
Bda07g00267 811 Gene3D Cysteine proteinases 305 811 - -
Bda07g00267 811 SUPERFAMILY RING/U-box 163 270 - -
Bda07g00267 811 Gene3D - 658 726 - -
Bda07g00267 811 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 257 IPR013083 -
Bda07g00267 811 MobiDBLite consensus disorder prediction 384 399 - -
Bda07g00267 811 Pfam Zn-finger in ubiquitin-hydrolases and other protein 184 258 IPR001607 GO:0008270
Bda07g00267 811 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 680 720 IPR015940 -
Bda07g00267 811 SUPERFAMILY Cysteine proteinases 308 810 IPR038765 -
Bda07g00267 811 MobiDBLite consensus disorder prediction 728 747 - -
Bda07g00267 811 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 313 328 IPR018200 GO:0004843|GO:0006511
Bda07g00267 811 Gene3D - 622 657 - -
Bda07g00267 811 ProSiteProfiles Zinc finger UBP-type profile. 160 270 IPR001607 GO:0008270
Bda07g00267 811 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 754 772 IPR018200 GO:0004843|GO:0006511
Bda07g00267 811 CDD UBA1_atUBP14 624 668 - -
Bda07g00267 811 Pfam UBA/TS-N domain 624 660 IPR015940 -
Bda07g00267 811 Pfam UBA/TS-N domain 682 717 IPR015940 -
Bda07g00267 811 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 14 810 - -
Bda07g00267 811 MobiDBLite consensus disorder prediction 595 617 - -
Bda07g00267 811 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 312 809 IPR028889 -
Bda07g00267 811 SMART Zf_UBP_1 183 238 IPR001607 GO:0008270
Bda07g00267 811 SUPERFAMILY UBA-like 663 722 IPR009060 GO:0005515
Bda07g00267 811 PIRSF UBP 7 810 IPR016652 GO:0004843|GO:0016579
Bda07g00267 811 Pfam Ubiquitin carboxyl-terminal hydrolase 312 806 IPR001394 GO:0004843|GO:0016579
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00267 K11836 USP5_13, UBP14; ubiquitin carboxyl-terminal hydrolase 5/13 [EC:3.4.19.12] - zju:107430502 1405.58
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g318 . . Bda07g00267 . . . . . . . . . . . . Cpe06g00723 . . . . . . . . . . . . . . . . . . . Lsi04g01275 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008963 1 1 1 0 1 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00267 Bda_Chr07 FPKM 2.517166 1.085921 1.733363 2.085833 9.963085 7.887729 10.254704 2.141074 1.479434