Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00274 ATGATGCTAGCCTCGTCACCTTCTACAATTGCACGGAGCTCGCTGGAGGTAATGCTGGATTCTCTCAGGCGGAGAGACGAGAATGACAAGGATAAGGACTTGCCTCCGGCACTGCCAGTTCGGCCTAACTCAAAGGGTCGTCTTCCTCCAGCTAGGAGGTCCTTTCCCATCGATTTCAAGGTGGGCGATGAGGGTATTCCACAGTGCTCCGTCAGTGAGCTTCATGGGAAAGAAGAAACAAAGAGGAAAGAAAAAGATTTTGAAAGCAGGAAGGGTAGCTTTGGAAGTAAGAGGATGAAGAAAGATCAAAATGAAGAATCGCCTTATGCTATAAGTCTAGAAAACTGCAGAAGTGATTATATGGAGGAATCTAATGGCGCTGCTGCTTCACCGGAAAATGTTGGAGATTCAGATTGGGATGACAACGTTGGCTATTTCATTAAGAAGAAACTCCTTGTTTGGTGTCCCCTCCCAAATGGAAAGTGGGAACCAGGAACTATACAATCAAGTACAGAGGAAGAAGCGGTTGTTCTTCTCTCAAAGGGGGAAGTTATGAAAGTCTCTACAGTGCAGCTCTTACCTGCTAACCCAGCTATCTTGGAAGGAGTTGATGATCTCATACAACTTAGTTATTTAAACGAGCCATCGGTTGTTCACAACCTCAAACAGAGATTTTCTCAAGATAAGATCTATAGTAAGGCAGGGCCAGTATTGATTGCAATCAATCCCTTCAAAGATGTCGGTTGTAATGGAAATGATGTTGTTATGGCATATCAACAGAAGATTGTTGACAGTCCTCATATTTATGCTACAACAGACACAGCCTATAACCAGATGATATTCATGAAATGCATAAAACTTTTTGACACATTAATTCTTTTCCTCAGTGGAGAAAGTGGAGCTGGGAAAACTGAGACGGCAAAAGTTGCCATGCAATACTTGGCTTCTCTAGGTGGTGGAAGTTTAGGGCTGGAGGATGGAATACTGCAAACAAATTATATACTGGAAGCATTTGGAAATGCTAAAACATCTAGGAATAATAACTCCAGTCGATTTATTTGTATTATTAAATCATGCTTTAATATTGCTTACTTTGAGCAGTCAAGGGTGGCTCAGCTGGCCCAAGGCGAGAGGTCCTACCATATCTTTTATCAACTTTGTGCTGGAGCCCCATCACTTCTTAAAGGGAGACTAAACCTAAAGGATGCCTGGGAGTACAAGTATCTCAATCAAAGTGAGTGCATAGTGATTGATGGTGTTGATGATGCACGAAAATTTAATATTCTCGAGGAAGCTCTAGACACCATTCAAATCTGCAAAGAGGATCAAGAAAATGCATTTTCTTTGCTCGTTGCAATTTTATGGCTAGGCAACATCTCATTTAAAGCAATTGATTCTGAAAATCGAGTGGAGGTGGTGGCTGATGAAGGTAATGTAATAACTCTATTGAGTGCAACAAAGCTCATGGGTTGCAGTTCCCAGGAGCTTATGTTAGTTTTATCGACCCAAAATATTAAAGCTGGAAAGGATACCATTGCCAAAAAGTTGACTTTGCGTCAGGCGATGGACACAAGAGATGCATTAGCGAAGTTTATCTATTCAAACTTATTTGACTGGCTTGTAGAACAAATTAACAAGTCATTTGCAGTGGGAAAACGTTGTACTGAAAGATCTATAAGCATTCTTGACATTTATGGGTTTGAGTCATTTAAGAAAAATAGCTTCGAACAATTTTGTATAAATTATGCCAATGAGAGGCTGCAACAACATTTTAATCGGCACCTGTTTAAACTTGAGCAAGAGGACTATGAAGTGGATGGAATTGATTGGACTGAAGTTAATTTTGAAGACAACCAAGAGTGTTTAAATCTCATAGAAAAGAAACCTCTAGGTATTCTAGCTTTGTTGGATGAGGAATCAAAGTTCCCTAATGCTACTGATCTTACATTTGCCAACAAACTTAAGCATCATTTGAATGGTGGGAATTCTTGCTTTAAAGGCGAAAGAGGCAGGGCCTTTGGTGTTCATCATTATGCTGGAGAGGTTGTATATGATACAAATGGATTTCTGGAGAAGAATAGAGATCCATTACCCTCTGAATCCATTCAGTTCCTTTCGTCATGTAGCTCCAAATTACTACAGTTGTTTGCCTCAAAAGTACTTACCCAGAAAGCAGCAGTTTCTCAATACCATATTGGTACTTTAGAATCTCACAAGCTGAGTGTTGGTGCAAAGTTCAAGATTGGGGCTTTGGAAGAAAAAAGGAAACAGATTCTGAATGGAATTGTTGGGTTGCAAAAATTCTTTCGAGGAAACCTTGCACGACGTCATTTCCACGGCCTTAGGAATGAAGCCATGACACTACAATCATTCGTTCGAGGCGAAAATGCCAGAAGAGAATATATTGTCACAGTTAGAACAAATGACGAGTTTCAAGCAATTATACAATTACAATCTGTGATTCGTGGTTGGCTTGTCCGAAGGCGTCACCGTGAGATGCTAGTTTTGAAGAAGCAATCTTATGATGGTGTGAAGACTAAACCAAAGCATTGTTGGAAGATTTCCGAAGTTATGCCAGAGGAAAAGATTGAAATTTTACCGACGGGGTTGGCAGAGCTTCAAATGCGGGTCCTGAAAGCAGAATCAACGTTGGAGAAAAAGGAAGAGGAAAATGCTTTACTGCGAGATCAAGTTCGACAATATGAGGTTAGGTGGTTAGAGTATGAAGCAAAGATGAAATCTATGGAGGAGATGTGGCAAAAGGAGATGACGTCTCTCCAAATGAGTCTTGCTGCTGCAAGAAAGAGCATACCTACTGACCAAGCTCCTGTTCTGCCTGCAAGAACCGGCGATATGTCACTATGTCGTTGTTATGATTCCGAGGGTGTGACATCAATGGGATCACAAACTCCTGGCACAAGCACACCAATCAAATATTCTACAATTTCTGAATTTGGAACTTTGCAGGATACCGGTACTGTGGATGCAGTAAGCAATCTGGTCAAGGAATTTGAGCAGCGGAAGCACACCTTCGATGATGATGCAAAAGCTTTAGTAGAAGCCAAATCAGAAACTAGCTTCCACCCTGATTTGGAGCTTCGGAAACTTAAAAAACAGTTTGAAAAATGGAAGAATGAGTACAAAGGTAGACTAAGGGAGGCAAAAGTAAAGATTCATAAACTTGGTCATTCTGATGCTGTAAGGAGACGTTGGAAATGGTGGGGAAAGTGA 3231 40.92 MMLASSPSTIARSSLEVMLDSLRRRDENDKDKDLPPALPVRPNSKGRLPPARRSFPIDFKVGDEGIPQCSVSELHGKEETKRKEKDFESRKGSFGSKRMKKDQNEESPYAISLENCRSDYMEESNGAAASPENVGDSDWDDNVGYFIKKKLLVWCPLPNGKWEPGTIQSSTEEEAVVLLSKGEVMKVSTVQLLPANPAILEGVDDLIQLSYLNEPSVVHNLKQRFSQDKIYSKAGPVLIAINPFKDVGCNGNDVVMAYQQKIVDSPHIYATTDTAYNQMIFMKCIKLFDTLILFLSGESGAGKTETAKVAMQYLASLGGGSLGLEDGILQTNYILEAFGNAKTSRNNNSSRFICIIKSCFNIAYFEQSRVAQLAQGERSYHIFYQLCAGAPSLLKGRLNLKDAWEYKYLNQSECIVIDGVDDARKFNILEEALDTIQICKEDQENAFSLLVAILWLGNISFKAIDSENRVEVVADEGNVITLLSATKLMGCSSQELMLVLSTQNIKAGKDTIAKKLTLRQAMDTRDALAKFIYSNLFDWLVEQINKSFAVGKRCTERSISILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEDYEVDGIDWTEVNFEDNQECLNLIEKKPLGILALLDEESKFPNATDLTFANKLKHHLNGGNSCFKGERGRAFGVHHYAGEVVYDTNGFLEKNRDPLPSESIQFLSSCSSKLLQLFASKVLTQKAAVSQYHIGTLESHKLSVGAKFKIGALEEKRKQILNGIVGLQKFFRGNLARRHFHGLRNEAMTLQSFVRGENARREYIVTVRTNDEFQAIIQLQSVIRGWLVRRRHREMLVLKKQSYDGVKTKPKHCWKISEVMPEEKIEILPTGLAELQMRVLKAESTLEKKEEENALLRDQVRQYEVRWLEYEAKMKSMEEMWQKEMTSLQMSLAAARKSIPTDQAPVLPARTGDMSLCRCYDSEGVTSMGSQTPGTSTPIKYSTISEFGTLQDTGTVDAVSNLVKEFEQRKHTFDDDAKALVEAKSETSFHPDLELRKLKKQFEKWKNEYKGRLREAKVKIHKLGHSDAVRRRWKWWGK 1076
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3897299 3907324 - Bda025355.3 Bda07g00274 9164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00274 1076 SMART iq_5 809 831 IPR000048 GO:0005515
Bda07g00274 1076 SMART iq_5 757 779 IPR000048 GO:0005515
Bda07g00274 1076 SMART iq_5 780 802 IPR000048 GO:0005515
Bda07g00274 1076 MobiDBLite consensus disorder prediction 21 109 - -
Bda07g00274 1076 Pfam Myosin head (motor domain) 203 747 IPR001609 GO:0003774|GO:0005524|GO:0016459
Bda07g00274 1076 ProSiteProfiles IQ motif profile. 781 810 IPR000048 GO:0005515
Bda07g00274 1076 PANTHER MYOSIN 747 1076 - -
Bda07g00274 1076 PANTHER MYOSIN 35 747 - -
Bda07g00274 1076 Gene3D Kinesin motor domain 204 567 IPR036961 -
Bda07g00274 1076 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 148 197 IPR004009 GO:0003774|GO:0005524|GO:0016459
Bda07g00274 1076 SMART MYSc_2a 195 808 IPR001609 GO:0003774|GO:0005524|GO:0016459
Bda07g00274 1076 MobiDBLite consensus disorder prediction 21 36 - -
Bda07g00274 1076 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 834 IPR027417 -
Bda07g00274 1076 Gene3D - 568 695 - -
Bda07g00274 1076 Gene3D Myosin VI head, motor domain, U50 subdomain 439 724 - -
Bda07g00274 1076 Gene3D - 762 808 - -
Bda07g00274 1076 Coils Coil 870 904 - -
Bda07g00274 1076 ProSiteProfiles IQ motif profile. 810 839 IPR000048 GO:0005515
Bda07g00274 1076 ProSiteProfiles IQ motif profile. 760 787 IPR000048 GO:0005515
Bda07g00274 1076 PRINTS Myosin heavy chain signature 333 360 IPR001609 GO:0003774|GO:0005524|GO:0016459
Bda07g00274 1076 PRINTS Myosin heavy chain signature 611 639 IPR001609 GO:0003774|GO:0005524|GO:0016459
Bda07g00274 1076 PRINTS Myosin heavy chain signature 231 250 IPR001609 GO:0003774|GO:0005524|GO:0016459
Bda07g00274 1076 PRINTS Myosin heavy chain signature 558 586 IPR001609 GO:0003774|GO:0005524|GO:0016459
Bda07g00274 1076 PRINTS Myosin heavy chain signature 290 315 IPR001609 GO:0003774|GO:0005524|GO:0016459
Bda07g00274 1076 MobiDBLite consensus disorder prediction 74 107 - -
Bda07g00274 1076 Coils Coil 1033 1053 - -
Bda07g00274 1076 Gene3D - 378 437 - -
Bda07g00274 1076 Pfam IQ calmodulin-binding motif 812 831 IPR000048 GO:0005515
Bda07g00274 1076 Pfam IQ calmodulin-binding motif 785 801 IPR000048 GO:0005515
Bda07g00274 1076 Pfam IQ calmodulin-binding motif 762 779 IPR000048 GO:0005515
Bda07g00274 1076 PANTHER MYOSIN-2 ISOFORM X1 747 1076 - -
Bda07g00274 1076 PANTHER MYOSIN-2 ISOFORM X1 35 747 - -
Bda07g00274 1076 ProSiteProfiles Myosin motor domain profile. 201 747 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00274 K10357 MYO5; myosin V - qsu:112007399 952.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00274 Bda-Chr7:3897299 Bda14g00003 Bda-Chr14:22894 0 dispersed
Bda07g00274 Bda-Chr7:3897299 Bda07g01187 Bda-Chr7:14290412 7.20E-123 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g297 . . Bda07g00274 . . . . . . . . . . . . Cpe06g00718 Cpe02g00725 . . . . . . . Cla11g01804 Cam11g1870 Cec11g1894 Cco11g1900 Clacu11g2033 Cmu11g1838 Cre11g2245 Cone6ag0113 . Cone14ag1087 Cone15ag1098 Lsi04g01280 . . . . . . . Bpe11g00503 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004216 2 1 1 4 3 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00274 Bda_Chr07 FPKM 0.462222 0.612695 1.553297 2.281321 0.0 0.0 0.0 1.022226 1.454272