Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00281 ATGCTTCGCAAGTTCTCGAAGCAATTCGCTCGATGCAATTCAACAGGAGGCCCTTCTGGAAGACATTGGGTGCTCGACCCTGTCGACGGAACTCTAGGCTTCGTTCGTGGGGATCAATATGCTGTTGCTTTGGCCTTGATCGAAGGCGGAAAAGTTGTCGTTGGCGTTCTTGGATGTCCAAATTACCCAATGAAGCGAGAGTGGCTTTATTACCATCACAAGTTTTACCAATCTATGTCGGAGTTATCACCCCCCTCTACCGATACATGGGAAAAAGGATGTGTAATGTATGCGAAAAGAGGTGGGACTGGAGCTTGGATGCAGCCATTGATAAATGGCGCCGAGAAGTTCGAGTGGCCAAATTCAGCTCGACCAATTCGCGTTTCTTCCATAAATGATCCAGCTCTAGCAACTTGGTGCGAACCAGTTGAGAAGCAAAACTCAAACCATTCTTTTACATCAGAACTTACAAACAGCATGGGGCTAAGGAAACAGCCATTGAGGGTATACAGCATGGTGAAATATGCAGCCATAGCCAGAGGAGATGCTGAGATTTTCATGAAGTTTGCAAGGAGTGGATATAAAGAAAAGGTGTGGGACCATGCTGCTGGAGTTGTCATAGTAGAGGCTGCCGGAGGTGTGGTGAGTGATGCCGGAGGCCGGCCACTCGATTTCTCCAAAGGGGTTTTCTTAGAAGGTCTAGACCGAGGAATAGTCGTTTGTTCGGGACCCGAAATGCACGAGAAGATTATCGGAGCTGTTTACGCTAGTTGGGACTCATCTAATCTATGA 792 47.6 MLRKFSKQFARCNSTGGPSGRHWVLDPVDGTLGFVRGDQYAVALALIEGGKVVVGVLGCPNYPMKREWLYYHHKFYQSMSELSPPSTDTWEKGCVMYAKRGGTGAWMQPLINGAEKFEWPNSARPIRVSSINDPALATWCEPVEKQNSNHSFTSELTNSMGLRKQPLRVYSMVKYAAIARGDAEIFMKFARSGYKEKVWDHAAGVVIVEAAGGVVSDAGGRPLDFSKGVFLEGLDRGIVVCSGPEMHEKIIGAVYASWDSSNL 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3962148 3963040 + Bda025362.1 Bda07g00281 9171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00281 263 Gene3D - 2 118 - -
Bda07g00281 263 ProSitePatterns Inositol monophosphatase family signature 2. 199 213 IPR020550 GO:0046854
Bda07g00281 263 ProSitePatterns Inositol monophosphatase family signature 1. 23 36 IPR020583 -
Bda07g00281 263 Gene3D - 127 257 - -
Bda07g00281 263 PANTHER PHOSPHATASE 8 263 - -
Bda07g00281 263 PANTHER PAP-SPECIFIC PHOSPHATASE HAL2-LIKE 8 263 - -
Bda07g00281 263 SUPERFAMILY Carbohydrate phosphatase 11 256 - -
Bda07g00281 263 CDD PAP_phosphatase 20 256 - -
Bda07g00281 263 Pfam Inositol monophosphatase family 12 258 IPR000760 GO:0046855
Bda07g00281 263 TIGRFAM bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase 8 262 IPR006239 GO:0006790|GO:0008441
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00281 K01082 cysQ, MET22, BPNT1; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] - cpap:110807053 442.965
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00281 Bda-Chr7:3962148 Bda07g01010 Bda-Chr7:11883999 1.95E-80 dispersed
Bda07g00281 Bda-Chr7:3962148 Bda10g00403 Bda-Chr10:36153990 2.27E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g277 Blo03g00636 . Bda07g00281 . . . . . . . . Cma09g00889 Car01g01014 Car09g00806 Sed04g3152 Cpe06g00712 Cpe02g00719 Bhi09g02007 Tan01g4439 Cmetu04g1200 . Hepe01g1361 Mch11g1105 . Cla11g01794 Cam11g1859 Cec11g1883 Cco11g1890 Clacu11g2021 Cmu11g1829 Cre11g2235 Cone6ag0120 . . . Lsi04g01292 . . . . . . . Bpe11g00497 Bpe01g00390 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001761 2 2 2 2 1 1 4 2 1 2 2 2 4 2 2 4 1 3 4 2 2 2 2 2 2 2 2 2 3 1 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00281 Bda_Chr07 FPKM 0.0 0.0 1.450749 1.337421 2.335934 3.056244 2.82177 2.086148 2.821721