Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00286 AGGATGAGCAAGACCGGAGACGAAGACGAAGACGACGAGTGCTTCTACGAATCTCTTGATCGCTTAGTCTCCTCCTCTTGTTCTTGCTCCACTTCTAATTCGGACTCTGACAACGATTCCAATTCTTGTTCTCCGAATTATGGATCGGAGCATGTTTTTTCAGTCCCCAAGTTCCCTGCGGGTGTGTCTAACTACGATCTTTGGGTCGCCGAGCCTTCTTCCGTTTCAGAGCGGCGTAATCGCCTTCTCCAGGATATGGGCCTCACCAAGGATCCCTCTTTGTCGCGGGTCAAATTTGTGTCTGAAGATAAAGAAAGCGATTCCATGGAGTTCACTCGTTTGGTATTATCAGATCACTTGAGCCGTCAAGCTCAACGTAACGCAATCATCTTGTCAAAATCGGATGCTGCGTCAAACCATATCGTAAGCCAACACAATCGCCCTTATCATCATGTTGATAATAAGTTCAATTCTTCTTCTTCTTCTTCTTCGGTTTATTCTCCTTCAATTCTTTCATCTCATCTAGTTGATGGGACTAGTTTGTCTGTAAATAATCGTAACCATTTAATTATGAAATCCCAAAGTGGCAAGGACGACGGAACTTTATCCGTCGGTAGTGCAACCTTGCCGAATAAGCCGCCATTAGGAAAAGTTTGTAAAAGATTGGATGAGATTCGGAGTGATTCCGCTGTTTTAAATGCTAGTTCTGATGCCAATAGATTTCCATCGCACGGAAATGAGGGAAGTGGCGGAGAGGTTTCAGAGGATTTGGATTGTAATGGCATTGGTAAGGTTGATGACCAAGTCTATACCATTAAGGATCTCGATAATGGAAAAGAATTTATTGTGAACGAGATTAGGGAAGATGGTATGTGGAATAAGCTCAAGGAAAATGTGGAGGAAGGCAATAAAGATAATGTCCACTCCTGTGTGAATGGCAGCAGTGGAGGCAGTTCGAAATTGAAGAAGAAAGGAGGCTGGTTAAAGGGTATAAAGAGCGTGGCTAACACCATGACAGGGCAAAAAGAGAGGAGGAGCAGTGATGAGAGGGATACTTCATCTGAAAAGGGTGGTCGTAGATCAAGTTCTGCTACAGATGACAGCCAAGACATTTCATTTCATGGGCCAGAGAGAGTAAAAGTGCGGCAATATGGGAAGTCTAATAAAGAGCTCACAGCACTTTATAAGAGCCAGGAGATTCAGGCTCATAGTGGCTCTATATGGACCATTAAGTTCAGTTTGGACGGTAAATACCTTGCCAGTGCAGGTGAGGATCGGGTCATTCATGTTTGGCAAGTTTTGGAGTCAGAGAGAAAGGGGGAACTATTGGGAGACAAATCAGAAGATGGGAACTTGAATTTTTTGTTCTTAGGCAATGATTCGCCTGAACCAACTTCATTGTTGCTGAATATAGACTATCATCCCGAGAAGAAGAGAAGGGGGAGGTCTTCTTTAAGCCGAAAATCAATGAGCTTTGAACATGTTGTAGTGCCGGAGACTATATTCGCTATTTCAGAGAAACCTGTGTGCTCATTCCAAGGACATCTTGATGTGGTTCTTGACCTTTCCTGGTCCAAATCTCAGCATTTGCTCTCATCTTCTATGGACAAAACAGTGCGGCTATGGAACTTGTCTAGCAAATCATGTTTGAAAATATTTTCACACAGTGACTACGTAACATGCATCCAGTTCAATCCTGTTGACGACAGATACTTCATCAGCGGATCTTTAGATGCCAAGGTTCGTATATGGAGTGTCCCAGATCGTCAAGTTGTTGATTGGAGTGATCTGCATGAGATGGTGACTTCTGCTTGCTATACTCCAGATGGCCAGGGTGCATTGGTTGGTTCTTACAAAGGAAGTTGTCGTTTATACAACACATCGGATAACAAATTGCAGCCGAAATCTCATATCAATCTGCAGAACAAGAAGAAAAAATCTAATCAGAAAAAGATCACTGGTTTTCAGTTTGCCCCAGGGAGTTCATCAGAAGTTCTCATAACATCTGCAGATTCACGAATCCGGGTCGTTGATGGTGTTGAGCTGGTGCACAAAAATCTTTGGGGAAGTTTTCAGAATTTTGGAATGTCTGCTCAAGTTGGTTTTGTTGATGTTCCAGGATTTCGCAACACAAACCGCCAAATTTCAGCCTACCTTACCGCAAATGGTAAATACGTGGTTTCTGCTAGTGAGGATTCTCACGTCTATATATGGAAACACGAGGCCGAATCTCGACCAATCAGAAGCAAAAGCGTCACAGACACATACTCTTACGAATACTTTCACTGCCCAGATGTGACGGTTGCGGTGCCATGGCCCGGCATCACCGACGCATGGGAATTTCATAACTCTTTAACTGGAGAGCAAAACGAATTTGATAACAATCTCGAAGATGTCTCAACGGCCAATCATCCTCCTACACCAGTTGAGGACGTAAACGACCAAGACGGCTCACTTCCAGCCTCTGGCTTCACCAACAGTCCGCTTCACAGTACTATTTCAAGTGTCACCAACAGTTTCTTCTTTGATCGAATCTCCGCCACTTGGCCGGAGGAGAAACTCCAAAGCTCTCGAAATCGGAGTAGTCCTCGAATTAGCAGTAACATCTCTAACGGAACAAGTCAGAGCTCTTCTTCGGCTTGGGGTATGGTGATAGTTACGGCGGGTCTTCAAGGGGAACTAAGAACTTTCCAGAATTTCGGATTGCCAATTCGACTTTGA 2721 44.06 RMSKTGDEDEDDECFYESLDRLVSSSCSCSTSNSDSDNDSNSCSPNYGSEHVFSVPKFPAGVSNYDLWVAEPSSVSERRNRLLQDMGLTKDPSLSRVKFVSEDKESDSMEFTRLVLSDHLSRQAQRNAIILSKSDAASNHIVSQHNRPYHHVDNKFNSSSSSSSVYSPSILSSHLVDGTSLSVNNRNHLIMKSQSGKDDGTLSVGSATLPNKPPLGKVCKRLDEIRSDSAVLNASSDANRFPSHGNEGSGGEVSEDLDCNGIGKVDDQVYTIKDLDNGKEFIVNEIREDGMWNKLKENVEEGNKDNVHSCVNGSSGGSSKLKKKGGWLKGIKSVANTMTGQKERRSSDERDTSSEKGGRRSSSATDDSQDISFHGPERVKVRQYGKSNKELTALYKSQEIQAHSGSIWTIKFSLDGKYLASAGEDRVIHVWQVLESERKGELLGDKSEDGNLNFLFLGNDSPEPTSLLLNIDYHPEKKRRGRSSLSRKSMSFEHVVVPETIFAISEKPVCSFQGHLDVVLDLSWSKSQHLLSSSMDKTVRLWNLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSVPDRQVVDWSDLHEMVTSACYTPDGQGALVGSYKGSCRLYNTSDNKLQPKSHINLQNKKKKSNQKKITGFQFAPGSSSEVLITSADSRIRVVDGVELVHKNLWGSFQNFGMSAQVGFVDVPGFRNTNRQISAYLTANGKYVVSASEDSHVYIWKHEAESRPIRSKSVTDTYSYEYFHCPDVTVAVPWPGITDAWEFHNSLTGEQNEFDNNLEDVSTANHPPTPVEDVNDQDGSLPASGFTNSPLHSTISSVTNSFFFDRISATWPEEKLQSSRNRSSPRISSNISNGTSQSSSSAWGMVIVTAGLQGELRTFQNFGLPIRL 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4007315 4013088 + Bda025367.2 Bda07g00286 9176

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00286 906 MobiDBLite consensus disorder prediction 192 215 - -
Bda07g00286 906 MobiDBLite consensus disorder prediction 235 257 - -
Bda07g00286 906 MobiDBLite consensus disorder prediction 796 825 - -
Bda07g00286 906 MobiDBLite consensus disorder prediction 342 363 - -
Bda07g00286 906 ProSiteProfiles Trp-Asp (WD) repeats profile. 400 441 IPR001680 GO:0005515
Bda07g00286 906 PANTHER WD REPEAT DOMAIN 44 297 906 IPR040324 -
Bda07g00286 906 SMART WD40_4 505 543 IPR001680 GO:0005515
Bda07g00286 906 SMART WD40_4 393 432 IPR001680 GO:0005515
Bda07g00286 906 SMART WD40_4 701 739 IPR001680 GO:0005515
Bda07g00286 906 SMART WD40_4 546 585 IPR001680 GO:0005515
Bda07g00286 906 SMART WD40_4 633 678 IPR001680 GO:0005515
Bda07g00286 906 SMART WD40_4 588 626 IPR001680 GO:0005515
Bda07g00286 906 Gene3D - 378 461 IPR015943 GO:0005515
Bda07g00286 906 Gene3D - 499 769 IPR015943 GO:0005515
Bda07g00286 906 ProSitePatterns Trp-Asp (WD) repeats signature. 530 544 IPR019775 -
Bda07g00286 906 ProSiteProfiles Trp-Asp (WD) repeats profile. 552 586 IPR001680 GO:0005515
Bda07g00286 906 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 512 546 - -
Bda07g00286 906 ProSiteProfiles Trp-Asp (WD) repeats profile. 512 552 IPR001680 GO:0005515
Bda07g00286 906 SUPERFAMILY WD40 repeat-like 396 775 IPR036322 GO:0005515
Bda07g00286 906 PANTHER WD REPEAT DOMAIN 44 5 297 IPR040324 -
Bda07g00286 906 Pfam WD domain, G-beta repeat 507 543 IPR001680 GO:0005515
Bda07g00286 906 Pfam WD domain, G-beta repeat 548 585 IPR001680 GO:0005515
Bda07g00286 906 Pfam WD domain, G-beta repeat 399 431 IPR001680 GO:0005515
Bda07g00286 906 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 552 586 - -
Bda07g00286 906 MobiDBLite consensus disorder prediction 27 46 - -
Bda07g00286 906 MobiDBLite consensus disorder prediction 305 319 - -
Bda07g00286 906 MobiDBLite consensus disorder prediction 304 379 - -
Bda07g00286 906 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 5 297 - -
Bda07g00286 906 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 297 906 - -
Bda07g00286 906 MobiDBLite consensus disorder prediction 852 877 - -
Bda07g00286 906 MobiDBLite consensus disorder prediction 192 208 - -
Bda07g00286 906 PRINTS G protein beta WD-40 repeat signature 572 586 IPR020472 -
Bda07g00286 906 PRINTS G protein beta WD-40 repeat signature 419 433 IPR020472 -
Bda07g00286 906 PRINTS G protein beta WD-40 repeat signature 530 544 IPR020472 -
Bda07g00286 906 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 400 433 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00286 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - csv:101208316 1090.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00225 Bda-Chr1:25983817 Bda07g00286 Bda-Chr7:4007315 4.63E-175 dispersed
Bda01g00230 Bda-Chr1:26252507 Bda07g00286 Bda-Chr7:4007315 1.79E-173 dispersed
Bda07g00286 Bda-Chr7:4007315 Bda07g01942 Bda-Chr7:36880142 6.86E-110 dispersed
Bda07g00286 Bda-Chr7:4007315 Bda15g00789 Bda-Chr15:11794083 4.13E-122 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g261 . . Bda07g00286 . . . . . . . Cma01g01196 Cma09g00880 Car01g01021 . Sed14g0480 Cpe06g00704 Cpe02g00713 Bhi09g03394 Tan01g4420 Cmetu08g0046 . Hepe01g1370 Mch11g1089 . Cla11g01778 Cam11g1842 Cec11g1863 Cco11g1873 Clacu11g2004 Cmu11g1813 Cre11g2221 Cone6ag0130 Cone9ag0154 Cone14ag1075 Cone15ag1068 Lsi04g01318 Csa04g02363 Chy07g00092 . . . . . Bpe11g00491 . . . . Cmo01g01250 Cmo09g00870 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006973 1 1 1 1 1 0 1 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00286 Bda_Chr07 FPKM 48.700821 53.610435 33.889282 27.541124 22.294188 27.595245 21.52545 47.495449 48.953335