Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00287 ATGGCTCTCCAGGCTGCTTCCTTGGTTTCCTCTGGTTTCTCCATTCCTAAAGAGGGAAAAGTGACTGTTTCTTTCAAAGATTCAAGTTTGTTTGGAGTTTCATTGTCGGATCATGTCAAAGTTGAGTCCTGCTCCTCTGCTCTGAGGTGCAAGCAGGTTGGGGCAGTTCGTGCCCAAACGTCGGCCACAACAACTCCGGCAGTGACCAAATCTGCACCAGAGGGAAAGAAGACGCTAAGAAAAGGCAGTGTTATTATCACCGGAGCTTCCTCTGGATTGGGTTTAGCCACAGCCAAGGCACTGGCTGAAACCGGAAAATGGGATATAATTATGGCATGCAGAGATTTCCTCAAAGCTGAAAGGGCTGCAAAAGCCGCTGGCATGTCCAAAGAAAACTACAGCATTATGCACTTAGACCTTGCTTCGCTTGACAGTGTTCGTCAATTTGTCGACAACTTTAGGCGATCGGGCAAGCCTCTTGACGTGCTTGTGTGCAATGCCGCTGTCTACTTACCAACTGCTAAGGAGCCTACCTTCACTGCCGATGGATTTGAACTTAGTGTTGGGACTAATCATCTCGGCCACTTTCTTCTATCGAGATTGTTGCTAGAGGACTTGAATAAATCCGATTACCCATCAAGACGGCTCATTATCGTTGGTTCAATCACGGGTAATGATAACACCTTGGCTGGAAATGTGCCTCCTAAGGCAAACTTGGGTGACATGAGGGGACTTGCCGGAGGGCTCAACGGGCTGAACAGCTCGACCATGATTGACGGAGGAGCGTTTGACGGTGCTAAGGCTTACAAGGACAGCAAAGTTTGCAATATGCTGATGATGCAAGAGTTTCACAGGCGTTACCATGAAGGAACCGGCATAACCTTTGCATCTCTCTACCCGGGATGCATTGCCACAACCGGGTTGTTTAGGGAGCACATTCCCTTGTTCAGGCTTCTGTTTCCTCCTTTCCAAAAGTACATCACGAAAGGCTTCGTCTCCGAGGAGGAATCTGGCAACAGGCTGGCCCAGCAGGCTGTTGTGGAGCTCAATTGCTGTGATTATGCTTCTTTTTCTCACTGCTTTTTGTTTCTAATGCAGGTTGTGAGCGATCCAAGCTTGACGAAATCGGGTGTGTATTGGAGTTGGAACAAGGATTCGGCTTCATTTGAGAATCAATTGTCGAAGGAAGCAAGCAATGCCGACAAGGCTCGAAAGGTGTGGGAAGTTAGCGAAACGCTGGTCGGATTGGCGTAA 1254 48.48 MALQAASLVSSGFSIPKEGKVTVSFKDSSLFGVSLSDHVKVESCSSALRCKQVGAVRAQTSATTTPAVTKSAPEGKKTLRKGSVIITGASSGLGLATAKALAETGKWDIIMACRDFLKAERAAKAAGMSKENYSIMHLDLASLDSVRQFVDNFRRSGKPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLEDLNKSDYPSRRLIIVGSITGNDNTLAGNVPPKANLGDMRGLAGGLNGLNSSTMIDGGAFDGAKAYKDSKVCNMLMMQEFHRRYHEGTGITFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGFVSEEESGNRLAQQAVVELNCCDYASFSHCFLFLMQVVSDPSLTKSGVYWSWNKDSASFENQLSKEASNADKARKVWEVSETLVGLA 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4014047 4015636 + Bda025368.2 Bda07g00287 9177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00287 417 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 79 314 IPR036291 -
Bda07g00287 417 CDD LPOR_like_SDR_c_like 81 416 - -
Bda07g00287 417 Pfam short chain dehydrogenase 84 227 IPR002347 -
Bda07g00287 417 PANTHER - 364 416 IPR005979 GO:0016630
Bda07g00287 417 PANTHER - 1 343 IPR005979 GO:0016630
Bda07g00287 417 PANTHER NADPH-PROTOCHLOROPHYLLIDE OXIDOREDUCTASE 364 416 - -
Bda07g00287 417 PANTHER NADPH-PROTOCHLOROPHYLLIDE OXIDOREDUCTASE 1 343 - -
Bda07g00287 417 Gene3D - 70 417 - -
Bda07g00287 417 PRINTS Glucose/ribitol dehydrogenase family signature 83 100 IPR002347 -
Bda07g00287 417 PRINTS Glucose/ribitol dehydrogenase family signature 158 169 IPR002347 -
Bda07g00287 417 PRINTS Glucose/ribitol dehydrogenase family signature 291 308 IPR002347 -
Bda07g00287 417 TIGRFAM LPOR: light-dependent protochlorophyllide reductase 80 343 IPR005979 GO:0016630
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00287 K00218 por; protochlorophyllide reductase [EC:1.3.1.33] - twl:119988413 660.218
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00287 Bda-Chr7:4014047 Bda08g00502 Bda-Chr8:5097685 6.43E-28 dispersed
Bda07g00287 Bda-Chr7:4014047 Bda06g00690 Bda-Chr6:9530779 4.18E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g260 Blo03g00643 Blo03g01537 Bda07g00287 . . Bpe08g01033 . . . . Cma01g01197 . Car01g01022 Car09g00792 Sed05g2572 Cpe06g00703 Cpe02g00712 Bhi09g03395 Tan01g4418 Cmetu07g1898 . Hepe01g1371 Mch11g1088 . . . . . . . . Cone6ag0131 Cone9ag0156 Cone14ag1074 Cone15ag1067 Lsi04g01319 Csa04g02361 Chy07g00090 . . . . . Bpe11g00490 . Bma07g01189 . . Cmo01g01251 Cmo09g00869 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003266 1 2 1 1 2 1 3 1 1 2 1 0 2 2 1 3 0 4 3 1 1 2 2 2 2 1 2 2 2 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00287 Bda_Chr07 FPKM 0.535417 1.268773 0.0 0.644581 0.569318 0.539874 0.0 2.145014 1.659512