Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00298 ATGGAGGGATCATCTAATTCACACTGGCAGAAGTCTGAAAGTAATAGACGTTTTAATTCTCGTTCCAACGCGTTCGAGTTATCTCGTGATTCTAGGCCTGGAAAAGTGAGAGAAAGGGTTGGAATTGCTGCCCATGCTAATGTTTTTAGGCAAAGCCATGAAGGATTTTCTGAGGGTTTTGAAGAGGGCGAACTATCAAATGATCCTTTCATTGGTTCGGCCGAAAAGGGTGATGTTAGCTTGAGACATTGGTTGGATAAACCCAACAGATCAGTTGATGCTTTTGAATGTCTTCATATATTTAGGCAAATTGTGGAGATAGTTTATGCGGCTCATTCTCAAGGAATTGTTCTTCTCAACTCTCGTCCTTCATGCTTTGTGATGCCGTCTTTCAATCGTGTATCCTTCATTGAATCGGCATCTTGTTCAGATTCTGGGTCTGATTCTATGAAGGATAGATTAATTGACCAAACAATGGAGGTTAATAATTTGTCGTCTCCTCCGCCGAAGAATCTAGCAAGTAAAGAGTTTCAGCTTCCATTGCTCCCAATTAATAGTTTCTTAGCAAATTCTTCTGTGGAGTTGAGCTCCCTCCATGTAGCCCAAGAATCGATGATAGAAGAGGCTGGAAAACCAAAAGATAAAGACATTAAAAATGTGAATTTGGCAGAAGAAGGGAAAGCATCCTTTCCAAATAAGCAAATTTTGGTATTGGAGAGTAGTTGGTACACTAGTCCTGAAGAGACTTCTGGCTCCTCAAGTTCTTGTTCTTCTGATATCTACCGTCTGGGAGTCCTCCTTTTCGAGTTATTCTGCCCCTTCTCTTCGCGGGAGGAAAAAATTAGAACTATGTCTAGTCTGAGACATCGAGTTCTTCCACCTCAATTACTGATGAAGTGGCCCAAAGAAGCTTCATTTTGCCTATGGCTGCTGCACCCTGAACCAAGCTGTCGACCAAAATTAAGTGAATTGTTACAGAGCGAATTCCTTAATGAATGGCGAAATGAGTTTCAAGAGCGAGAAGCTGCACTAAAGCTTGAAGAGAGAGTAGAGCAGCAGGAGTTGTTGCTAGAATTTCTTTTGCTCGTCTGGGATGTTACAAGAAGTCAAGTACTAATCGAAATGCAAGAACATGAAAAACGTGTGTGGTCTGTCGACTTCTCGTCAGCAGATCCAACCATTTTGGCCAGTGGAGGGGACGATGGGTCTGTGAAGTTGTGGAGTATCAATCAGGCAAGCTCTCTTTTCCTTGTTTTGCTATCACTGGATTTTTATTTTCAGGCAAAGAGTATTGGTACAATTAAAACGAAGGCCTATGTTTGTTGTGTTCAATTTCCCTCGGATTCGAGTCGCACCCTATCGTTTGGTTCGGCAGATCATAAAATATATTATTACGATCTCAGAAATCCGAAACTCCCTCTCTGCACGTTTGTTGGGCACAATAAAACAGTGAGTTATGTCAAATTCATCGACTCGGAGACTCTTGTTTCGGCTTCGACCGATAATACTTTACGGCTCTGGGATTTGTCCATGTGCGCATCTCGCACTGTTGACTCTCCCATACAATCATACACTGGTCATTTGAATGTGAAGAATTTTGTCGGATTATCAGTCTCCAATGGTTTCATTGCTACTGGTTCAGAGACGAATGAGATTTACGTCTATCACAAAGCATTTCCGATGCCGGTCTTGTCATACAAGTTTCACACAGACCAACTTTCCAACCATGACATCAACGATGCTGCACAGTTTGTCTCTGCCGTTTGTTGGCGTGGCAACTCGTCAACGCTAATCGCCGCAAATTCCACCGGGAACATTAAAGTCCTGGAGATGACCTGA 1839 42.52 MEGSSNSHWQKSESNRRFNSRSNAFELSRDSRPGKVRERVGIAAHANVFRQSHEGFSEGFEEGELSNDPFIGSAEKGDVSLRHWLDKPNRSVDAFECLHIFRQIVEIVYAAHSQGIVLLNSRPSCFVMPSFNRVSFIESASCSDSGSDSMKDRLIDQTMEVNNLSSPPPKNLASKEFQLPLLPINSFLANSSVELSSLHVAQESMIEEAGKPKDKDIKNVNLAEEGKASFPNKQILVLESSWYTSPEETSGSSSSCSSDIYRLGVLLFELFCPFSSREEKIRTMSSLRHRVLPPQLLMKWPKEASFCLWLLHPEPSCRPKLSELLQSEFLNEWRNEFQEREAALKLEERVEQQELLLEFLLLVWDVTRSQVLIEMQEHEKRVWSVDFSSADPTILASGGDDGSVKLWSINQASSLFLVLLSLDFYFQAKSIGTIKTKAYVCCVQFPSDSSRTLSFGSADHKIYYYDLRNPKLPLCTFVGHNKTVSYVKFIDSETLVSASTDNTLRLWDLSMCASRTVDSPIQSYTGHLNVKNFVGLSVSNGFIATGSETNEIYVYHKAFPMPVLSYKFHTDQLSNHDINDAAQFVSAVCWRGNSSTLIAANSTGNIKVLEMT 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4081493 4087121 + Bda025380.2 Bda07g00298 9188

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00298 612 ProSiteProfiles Protein kinase domain profile. 1 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda07g00298 612 ProSitePatterns Trp-Asp (WD) repeats signature. 495 509 IPR019775 -
Bda07g00298 612 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 375 410 - -
Bda07g00298 612 SMART WD40_4 427 466 IPR001680 GO:0005515
Bda07g00298 612 SMART WD40_4 517 556 IPR001680 GO:0005515
Bda07g00298 612 SMART WD40_4 559 610 IPR001680 GO:0005515
Bda07g00298 612 SMART WD40_4 368 408 IPR001680 GO:0005515
Bda07g00298 612 SMART WD40_4 470 508 IPR001680 GO:0005515
Bda07g00298 612 SMART serkin_6 25 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda07g00298 612 SUPERFAMILY Protein kinase-like (PK-like) 78 341 IPR011009 -
Bda07g00298 612 PANTHER PROTEIN SPA1-RELATED 2 363 612 IPR044630 GO:0009640
Bda07g00298 612 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 477 510 - -
Bda07g00298 612 PRINTS G protein beta WD-40 repeat signature 453 467 IPR020472 -
Bda07g00298 612 PRINTS G protein beta WD-40 repeat signature 395 409 IPR020472 -
Bda07g00298 612 PRINTS G protein beta WD-40 repeat signature 495 509 IPR020472 -
Bda07g00298 612 PANTHER PROTEIN SPA1-RELATED 3 1 363 - -
Bda07g00298 612 ProSiteProfiles Trp-Asp (WD) repeats profile. 477 510 IPR001680 GO:0005515
Bda07g00298 612 PANTHER PROTEIN SPA1-RELATED 3 363 612 - -
Bda07g00298 612 ProSiteProfiles Trp-Asp (WD) repeats profile. 375 417 IPR001680 GO:0005515
Bda07g00298 612 SUPERFAMILY WD40 repeat-like 361 609 IPR036322 GO:0005515
Bda07g00298 612 Gene3D - 359 612 IPR015943 GO:0005515
Bda07g00298 612 Pfam WD domain, G-beta repeat 373 408 IPR001680 GO:0005515
Bda07g00298 612 Pfam WD domain, G-beta repeat 473 508 IPR001680 GO:0005515
Bda07g00298 612 MobiDBLite consensus disorder prediction 1 36 - -
Bda07g00298 612 MobiDBLite consensus disorder prediction 1 27 - -
Bda07g00298 612 PANTHER PROTEIN SPA1-RELATED 2 1 363 IPR044630 GO:0009640
Bda07g00298 612 Gene3D Transferase(Phosphotransferase) domain 1 78 343 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00298 - - - qsu:111982906 388.267
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00298 Bda-Chr7:4081493 Bda12g00841 Bda-Chr12:38051704 1.26E-102 dispersed
Bda07g00298 Bda-Chr7:4081493 Bda09g00507 Bda-Chr9:6716292 1.41E-139 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g217 . . Bda07g00298 . . Bpe08g01023 . . . . . . . Car09g00777 . . . Bhi09g02022 . . . . . . . . . . . . . . . . . Lsi04g02073 . . . . Blo10g00765 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003437 3 3 1 2 3 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 2 4 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00298 Bda_Chr07 FPKM 731.110474 801.564148 647.098328 621.508179 314.606659 396.177643 287.389557 358.423767 355.418182
Bda07g00298 Bda_Chr09 FPKM 54.287086 60.979706 83.20166 80.827072 60.153088 65.696815 54.500275 59.36557 54.596596
Bda07g00298 Bda_Chr13 FPKM 1153.764282 1192.89917 1494.392944 1427.233032 1114.091919 1403.871948 1038.636353 990.586304 966.322144