Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00318 ATGGCTGATACTGCAATGATAACTGAGGCTGCAGGATCAAGGTTTAGTTCTTTGGAGCTCATTGGAAGGGGATCATTTGGAGACGTCTATAAGGGGTTTGATAAGGAGCTCAACAAAGAAGTTGCTATAAAAGTTATTGATTTAGAAGAATCAGAAGATGAAATTGAGGATATTCAGAAGGAAATTTCTGTATTATCACAATGTCGATCTTCTTATATCACAGAGTATTACGGTTCTTATCTTAACCAGACTAAATTATGGATAATAATGGAATACATGGCTGGCGGCTCTGTTGCAGACTTGCTTCAATCAGGTCCACCTTTGGATGAAATGGCGATTGCTTGCATTCTACGTGACTTGCTGCATGCTGTTGATTATTTACACAGTGAAGGAAAAATCCACCGGGATATCAAAGCGGCAAACATTTTGTTGACCGAGAATGGTGATGTCAAGGTTGCAGATTTTGGTGTTTCTGCGCAATTAACTAGGACAATTTCAAGAAGAAAGACATTTGTAGGAACACCCTTTTGGATGGCACCAGAAGTAATTCAAAATTCAGAAGGATATAACGAGAAGGCGGATATCTGGTCTCTTGGAATCACTGCTATTGAGATGGCAAAAGGGGAGCCTCCTCTTGCGGATCTTCATCCAATGAGAGTTCTTTTTATCATACCTAGGGAGAATCCACCTCAGTTGGATGAGCATTTTTCTCGTCCAATGAAAGAATTTGTATCACTGTGTCTGAAGAAAGTACCCGCTGAGAGGCCAAGTGCCAAGGAGCTTCTAAAGCATCGATTTATTAGAAATGCGAGGAAGAGTCCAAGGCTTCTAGAAAGAATAAGAGAGCGTCCAAAGTACCAAATAAAGGAGGATGCTGAAACGACTAGAAATGGTCCTAGAGATAAGGGGGAGATGTCTGACACAGTCAAGGCGCCAAGAAGTTTACTAAGAGAAGAAAATGCGCATATCAGTAATCAGGGTAAAACCACAAAAAATGCTGGATGGGATTTTAGCATTGGTGGCTCACATGGAACAGGTACAGTTCGAAGTATAGTTAAACCACCTCAATTTGGAGAAAAGAAACCTGAAGTTCCACTCTCTGGTGGAAACCTACGGTTTGCTGCCTTTGGCAATGCACTTCGTGATGCCCCTGAAGATTTTTTCACAAAGGATGCTAGAGATTTATACCATGATAAACGTCGGGAAGATGTTAGTGATGATGAAGAGTTATCAGTAAGTGGATCCGGAACTGTTGTGATTCGATCTCCCCGAGGATCTCAGTCGACCGAATTCTTTAATCAAAGCAGTCTGTCAGGGAGCACTTATGCATCGTTTGAAGATGCTTCATCTAGTGGAACTGTAGTTATTCGTGGGCAACATGATGATACAGATTCTCCCCGAACTCCAAAGTCCAGACTTGGCCTTCAGGATAGGACTTCGACAGCCTCATTTGAAGACAGTGAATTAAACCTTTCAGAGGCAAAGGCTGCAATTCAAGCAGGGTTAAAGAAATCAAATGCTAGAGAAAGGTCTGCGCTTGGAAAAATTAATAATGATGGGAAGGAGAATCGAAGAGGGGAAATAACCAGTAGCTTTGATTCTTCCAGACATTCTAATGAATACTTAGATGCGCCAAAAGCATTTTCAAGATCGCAACCAGCAACTGAGACTGAAGAAAGTGCAAAAGTATTATCATTTTCTGCACCGTTATCTATTTTGCTCATCCCATCTTTGAAGGAGGCTGTTGGGGATGATTCTGAGAGATTATCTGTCCATGCAATTGCTAATTCACTAGTAAATATGGAAAACGGGAAGCCTGGATCTTGTGAAGTTCTTGTCAGCAAGCTGCTTCAGCGTTTGGCAAGTTCAAAGGAATCTTCGTTGAAAGATCTGCAAGAGCTCGGGGGTAGTATCTTCGCTAGAGAAAAGACGTCACCAATGGCCTCTGAAGAAACTAAAAATCCAACTGCAGATTCGGCCGACAAGAAAAAGCAACAGAGTAAAGAACTGAACTCCAATTCCAATTTAAGCCCCCTTGCTCGGTTTTTGCTCTCAAGGTTTGTCAATTTTTTTCTTATTCCCAGATTTATATGCCTTTCAAATATTATTAGTCCTCTTTCTGTTTCTCTCCTGCTTATGTTTGGCAATTGGTTGAAATCATCCCTTCTACGCATCGATTGA 2181 41.31 MADTAMITEAAGSRFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSSYITEYYGSYLNQTKLWIIMEYMAGGSVADLLQSGPPLDEMAIACILRDLLHAVDYLHSEGKIHRDIKAANILLTENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKEFVSLCLKKVPAERPSAKELLKHRFIRNARKSPRLLERIRERPKYQIKEDAETTRNGPRDKGEMSDTVKAPRSLLREENAHISNQGKTTKNAGWDFSIGGSHGTGTVRSIVKPPQFGEKKPEVPLSGGNLRFAAFGNALRDAPEDFFTKDARDLYHDKRREDVSDDEELSVSGSGTVVIRSPRGSQSTEFFNQSSLSGSTYASFEDASSSGTVVIRGQHDDTDSPRTPKSRLGLQDRTSTASFEDSELNLSEAKAAIQAGLKKSNARERSALGKINNDGKENRRGEITSSFDSSRHSNEYLDAPKAFSRSQPATETEESAKVLSFSAPLSILLIPSLKEAVGDDSERLSVHAIANSLVNMENGKPGSCEVLVSKLLQRLASSKESSLKDLQELGGSIFAREKTSPMASEETKNPTADSADKKKQQSKELNSNSNLSPLARFLLSRFVNFFLIPRFICLSNIISPLSVSLLLMFGNWLKSSLLRID 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4226532 4235191 - Bda025401.1 Bda07g00318 9208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00318 726 MobiDBLite consensus disorder prediction 469 487 - -
Bda07g00318 726 MobiDBLite consensus disorder prediction 502 539 - -
Bda07g00318 726 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 688 - -
Bda07g00318 726 MobiDBLite consensus disorder prediction 642 672 - -
Bda07g00318 726 SUPERFAMILY Protein kinase-like (PK-like) 12 298 IPR011009 -
Bda07g00318 726 CDD STKc_MST3_like 13 287 - -
Bda07g00318 726 MobiDBLite consensus disorder prediction 508 531 - -
Bda07g00318 726 MobiDBLite consensus disorder prediction 456 487 - -
Bda07g00318 726 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda07g00318 726 MobiDBLite consensus disorder prediction 399 433 - -
Bda07g00318 726 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Bda07g00318 726 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda07g00318 726 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda07g00318 726 MobiDBLite consensus disorder prediction 286 313 - -
Bda07g00318 726 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 688 - -
Bda07g00318 726 Gene3D Transferase(Phosphotransferase) domain 1 12 306 - -
Bda07g00318 726 MobiDBLite consensus disorder prediction 346 367 - -
Bda07g00318 726 MobiDBLite consensus disorder prediction 410 433 - -
Bda07g00318 726 Coils Coil 41 68 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00318 K08838 STK24_25_MST4; serine/threonine-protein kinase 24/25/MST4 [EC:2.7.11.1] - vvi:100258981 994.571
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02122 Bda-Chr1:57248819 Bda07g00318 Bda-Chr7:4226532 3.58E-77 dispersed
Bda07g00318 Bda-Chr7:4226532 Bda13g01619 Bda-Chr13:39677955 2.52E-70 dispersed
Bda11g01809 Bda-Chr11:53177394 Bda07g00318 Bda-Chr7:4226532 4.64E-40 dispersed
Bda07g00318 Bda-Chr7:4226532 Bda01g01279 Bda-Chr1:48193562 2.92E-71 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda07g00318 . 1 688 MAP Kinase Kinase Kinase Kinase AT1G53165 61.4 2.6e-215 745.3
Bda01g02122 . 223 488 MAP Kinase Kinase Kinase Kinase AT1G53165 50.9 2.3e-67 253.8
Bda07g00318 . 1 688 MAP Kinase Kinase Kinase Kinase AT3G15220 64.7 6.1e-233 803.9
Bda01g02122 . 223 488 MAP Kinase Kinase Kinase Kinase AT3G15220 50.2 6.8e-67 252.3
Bda01g02122 . 9 825 MAP Kinase Kinase Kinase Kinase AT1G69220 57.8 4.9e-242 834.3
Bda07g00318 . 23 267 MAP Kinase Kinase Kinase Kinase AT1G69220 52.8 7.2e-68 255.8
Bda13g01619 BCT 1 589 MAP Kinase Kinase Kinase Kinase AT5G14720 66.7 6.6e-224 773.9
Bda01g01279 BCT 1 579 MAP Kinase Kinase Kinase Kinase AT5G14720 64.9 1.3e-216 749.6
Bda04g00785 . 3 352 MAP Kinase Kinase Kinase Kinase AT5G14720 69.7 3.1e-149 525.8
Bda06g01211 . 3 354 MAP Kinase Kinase Kinase Kinase AT5G14720 70.0 1.6e-145 513.5
Bda06g01226 . 368 666 MAP Kinase Kinase Kinase Kinase AT5G14720 71.7 3.1e-125 446.0
Bda08g00655 . 6 318 MAP Kinase Kinase Kinase Kinase AT5G14720 62.4 3.1e-125 446.0
Bda08g00655 . 8 634 MAP Kinase Kinase Kinase Kinase AT4G24100 59.9 1.3e-204 709.9
Bda06g01211 . 5 515 MAP Kinase Kinase Kinase Kinase AT4G24100 67.9 2.8e-188 655.6
Bda06g01226 . 368 962 MAP Kinase Kinase Kinase Kinase AT4G24100 61.6 3.7e-188 655.2
Bda01g01279 BCT 6 355 MAP Kinase Kinase Kinase Kinase AT4G24100 66.0 1.2e-135 480.7
Bda04g00785 . 2 353 MAP Kinase Kinase Kinase Kinase AT4G24100 64.8 2.3e-134 476.5
Bda13g01619 BCT 6 355 MAP Kinase Kinase Kinase Kinase AT4G24100 65.1 6.8e-134 474.9
Bda08g00655 . 9 634 MAP Kinase Kinase Kinase Kinase AT4G10730 60.5 4.0e-208 721.5
Bda06g01211 . 6 515 MAP Kinase Kinase Kinase Kinase AT4G10730 70.8 1.2e-196 683.3
Bda06g01226 . 368 962 MAP Kinase Kinase Kinase Kinase AT4G10730 63.3 6.2e-193 671.0
Bda04g00785 . 4 358 MAP Kinase Kinase Kinase Kinase AT4G10730 66.2 1.5e-138 490.3
Bda13g01619 BCT 7 376 MAP Kinase Kinase Kinase Kinase AT4G10730 63.8 3.7e-137 485.7
Bda01g01279 BCT 1 376 MAP Kinase Kinase Kinase Kinase AT1G70430 67.0 1.3e-146 516.9
Bda13g01619 BCT 5 351 MAP Kinase Kinase Kinase Kinase AT1G70430 70.9 7.1e-145 511.1
Bda04g00785 . 4 348 MAP Kinase Kinase Kinase Kinase AT1G70430 62.6 2.7e-128 456.1
Bda06g01211 . 2 401 MAP Kinase Kinase Kinase Kinase AT1G70430 54.8 7.6e-123 438.0
Bda06g01226 . 368 713 MAP Kinase Kinase Kinase Kinase AT1G70430 56.1 1.2e-107 387.5
Bda08g00655 . 5 307 MAP Kinase Kinase Kinase Kinase AT1G70430 55.1 2.3e-103 373.2
Bda04g00785 . 1 378 MAP Kinase Kinase Kinase Kinase AT1G79640 83.6 1.1e-186 650.2
Bda13g01619 BCT 4 360 MAP Kinase Kinase Kinase Kinase AT1G79640 68.3 4.4e-148 521.9
Bda06g01211 . 5 354 MAP Kinase Kinase Kinase Kinase AT1G79640 66.0 8.4e-139 491.1
Bda06g01226 . 368 666 MAP Kinase Kinase Kinase Kinase AT1G79640 69.2 6.9e-125 444.9
Bda08g00655 . 8 312 MAP Kinase Kinase Kinase Kinase AT1G79640 58.6 6.9e-117 418.3
Bda01g01279 BCT 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 57.4 5.6e-100 361.7
Bda13g01619 BCT 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 56.2 2.4e-98 356.3
Bda04g00785 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.7 3.5e-86 315.8
Bda06g01211 . 12 303 MAP Kinase Kinase Kinase Kinase AT1G23700 51.5 1.6e-78 290.4
Bda06g01226 . 368 615 MAP Kinase Kinase Kinase Kinase AT1G23700 53.4 5.1e-69 258.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005838 1 3 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69700 PF00069 Pkinase 2.10E-68 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00318 Bda_Chr07 FPKM 0.734982 1.009606 2.354745 4.031877 0.837375 0.748354 1.175245 4.115375 3.663611