Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00326 ATGCCTTCCACCGTCTCAAGCGGTCCATCTTCTCCAAATGTTGTTCGACAAACAGCCGCATACGAGCCGAGTATTTGGGGAGATCGCTTTCTCAACTACGAGTTCGAACCATTGGAAAAGCATGCCCTTATGGAGGAGGAGGCAGGAGAATTGAAGAAGGATGTGAAGAAGATGCTGTCAGAGAGTCCTACTGATTCTTTTGATCAACTTAAACTAATCGATGATATTCAACGGCTCGGCGTCGAGTACCATTTTGAAAGAGAGATCGAGTATGCTTTGGAATGCATATATGCTGCCTATCTCAATGAAGACCTCAAAGATAATGTCAGCCTCCATCATGTTTCTCTGCGTTTCCGATTGCTCAGACAACAAGGACTTAACATTTCATACACTTTGAACCCATTGAGAGATGGAAAAGGAAAGTTTAAAGAGCTCTTAGCCACCGACGTGGAAGGATTGCTAAGCCTCTATGAGGCTTCATTTTTGGGTTTGCAAGAAGAAACTTTGCTGGATGAGGCTCTTGCCTTCTCAACTACTCACCTTGAAGTCTTATCAAAGCAACAAATCTACCCTCTTTCAGACATGATATCTAGAGCCCTTGAATGTCCGTTGTGGAAGAGGATAGTGAGAGTAAAGGCTGCCCATTTCATCTCTATCTACAAAGACCTTCCTTCCCATAATGAAATCTTGCTAAGATTTGCGAAGCTCGATTATAGTCTAGTTCAATCTCTACACAAGAAGGAGCTCAGTTACTTGTGCAAGTATTGGAGTGCTGATAAAGTGAACGAACTTCCGGAGTACATGCAAATATGTTATCAAGCATTGTTAGATTGTTTCAAAGAAATTGAAGAACATATGATCAAACAAAGAACTTCTTATAGTTACTTCTACGCAAAAGAAGCTATGATCAAGCAAGTCGGATACTACTACGAAGAGGCGAAATGGCTGGACAAGAAATATAAGCCAACATTTGATGAATACATAGGCTTAGCTTCAAATTCAATCGGCAATGCTATGCTTTCCGCGATCTCTTTCGCCGGAATGAATTCTGAGGTTGTTAAGGAAGATGACTTCAAATGGCTGGCCAGTGAACCTAAGTTTCTTAAATCTGCGGAGTTGATTTGCAGGCTACTCGATGACTTAGTTTCCAGCAAGCTGGAGAAGCAACGAGGGCACATACCAACATCTGTGGAATGCTATACAAATCAGTACAAAGTATCTGAAGAAGAAGCAATCGTTGTATTAAAGAAGAAGATTTCAGATTCATGGAAGGATATAAACAAAGAGATTATGAAGCCAACAGCTGTGTCGAGGCCTCTTTTTATTAGGATTCTTGATGTTGTTCGAGTTATGGAAGAAATATATAAAGAAGAAGACTCCTATACCAATGTCGGAAAAGCACTTCAAGACGGGGTTTCCGCCATGTTCGCCGACGAATTTCCTATATGA 1449 41.2 MPSTVSSGPSSPNVVRQTAAYEPSIWGDRFLNYEFEPLEKHALMEEEAGELKKDVKKMLSESPTDSFDQLKLIDDIQRLGVEYHFEREIEYALECIYAAYLNEDLKDNVSLHHVSLRFRLLRQQGLNISYTLNPLRDGKGKFKELLATDVEGLLSLYEASFLGLQEETLLDEALAFSTTHLEVLSKQQIYPLSDMISRALECPLWKRIVRVKAAHFISIYKDLPSHNEILLRFAKLDYSLVQSLHKKELSYLCKYWSADKVNELPEYMQICYQALLDCFKEIEEHMIKQRTSYSYFYAKEAMIKQVGYYYEEAKWLDKKYKPTFDEYIGLASNSIGNAMLSAISFAGMNSEVVKEDDFKWLASEPKFLKSAELICRLLDDLVSSKLEKQRGHIPTSVECYTNQYKVSEEEAIVVLKKKISDSWKDINKEIMKPTAVSRPLFIRILDVVRVMEEIYKEEDSYTNVGKALQDGVSAMFADEFPI 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4375321 4377743 - Bda025412.2 Bda07g00326 9216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00326 482 Coils Coil 41 61 - -
Bda07g00326 482 Pfam Terpene synthase family, metal binding domain 256 425 IPR005630 GO:0000287|GO:0010333|GO:0016829
Bda07g00326 482 SUPERFAMILY Terpenoid synthases 226 478 IPR008949 -
Bda07g00326 482 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 23 223 IPR008930 -
Bda07g00326 482 PANTHER OS04G0344100 PROTEIN-RELATED 256 461 - -
Bda07g00326 482 PANTHER OS04G0344100 PROTEIN-RELATED 13 257 - -
Bda07g00326 482 Gene3D - 64 226 IPR036965 GO:0010333|GO:0016829
Bda07g00326 482 CDD Terpene_cyclase_plant_C1 16 478 IPR044814 GO:0010333|GO:0016102
Bda07g00326 482 Pfam Terpene synthase, N-terminal domain 25 200 IPR001906 GO:0010333|GO:0016829
Bda07g00326 482 Gene3D Farnesyl Diphosphate Synthase 23 257 IPR008949 -
Bda07g00326 482 Gene3D Farnesyl Diphosphate Synthase 258 480 IPR008949 -
Bda07g00326 482 PANTHER TERPENE SYNTHASE 2-RELATED 13 257 - -
Bda07g00326 482 PANTHER TERPENE SYNTHASE 2-RELATED 256 461 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00326 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] - pdul:117626040 363.229
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00326 Bda-Chr7:4375321 Bda07g00403 Bda-Chr7:5083279 2.00E-150 dispersed
Bda07g00326 Bda-Chr7:4375321 Bda07g00331 Bda-Chr7:4407928 1.97E-41 proximal
Bda07g00325 Bda-Chr7:4343716 Bda07g00326 Bda-Chr7:4375321 0 tandem
Bda12g00851 Bda-Chr12:38220171 Bda07g00326 Bda-Chr7:4375321 3.44E-26 wgd
Bda05g00742 Bda-Chr5:55763568 Bda07g00326 Bda-Chr7:4375321 2.82E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g400 Blo03g00604 . Bda07g00326 . . . . Bma13g00962 . . . . . . . . . . . . . . . . Cla10g00585 Cam10g0569 Cec10g0603 Cco10g0579 Clacu10g0605 Cmu10g1417 Cre10g0818 . . . . . Csa03g00574 . Cme06g02685 . . . . . . . . Sed06g0194 . . . Cma16g00826 . . . . Bhi11g00692 Tan01g1636 Cmetu06g2161 . . Mch10g1155 . . . . . . . . Lsi05g00660 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013164 2 0 21 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00326 Bda_Chr07 FPKM 3.42285 2.921373 0.976643 1.013192 0.713118 1.80039 1.673703 0.970375 1.487234