Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00331 GTGAAGGAGAAGGAGGTTCGAAAGTTGAAAGAAAACGTGAGAAACATGTTGGTAGGGAGTGCAAATGATTCATTTCATCAGTTGAAATTAATTGATGATATTCAACGTCTAGGCGTGGCTTACCATTTTGAAGGAGAAATCAAAGAAGCATTAGAGAATACATATGCAACATATTTTGACTGTAGTTTCAACAACTTCTTCATAGATTTAAACCATGTCTCTCTTTGTTTTCGACTTCTTCGACAACAAGGCATTAATATATCAAGTGACATATTTAACACATTCAAAGACGAAAAGGGCGTGTTCAAGGAAAGCTTAGCAACCGATGTGGAGGGGTTGCTTAGCTTGTATGAAGCTGCATTTCTAGGAGTAAGAGGAGAAACTGTGTTGGATGAGGCTCTTCTCTTCTCCACTACTCACCTTAAAGTTTTTCGTAAACGTGAAAGCAACACTCTTTCATGCATGGTTGCCAAAGCTCTTCGTAGACCTTTGCGGAAGAGCTTGGTGAGAGTAAATGCTCCTTATTTCATCTCAATCTACAAAGACCTTCCTTCGTACAATGAAACTCTACTAAGATTCGCAATATCAGATTTCAACCTTCTTCAATCTACGCACAAAAATGAGCTCTCTAATCTTCGAAAGTGGTGGAGAGATTTGGACTTTGGAAACAGACTTCCATTTGCAAGAGATAGAATGGTTGAATGTTTCTTTTGGACAACCTCAATAGGCTGGGAACCTGAGTTTTATCTCATGAGAAGAATATTAACCAAACTACTCTACCTTGTTTCTATAATGGATGACATCTATGATTCATATGGCACTTTCGCAGAACTTTCTCTTTTCACTCCAGCAATGAAAAGGTGGAGTCGTGAATCCATGAATAATCTTCCCGAATACATGAAAATATATCATGAAGCAGTCTTGGATTGCTTTGAAGAAATTGAAGAATTCATGATTAAACAAGGGACATTATATCGAATGTTCTACGCAAAAGAAGCAGTGGATAAGCAAGTTCAAGCCTACTTTGACGAGGCAGAATGGTGTAATAAGAAGTATATTCCAACAATGGAAGAATATCTATCTGTGTCTATGATATCAAGTGGTTATGCCCTCATTTCAATTATATGGTCTGTGGGGTTGCCTGGGGATGCTGTCACTGAGGAATTCTTTCAATGGCTGCTTAATCGACCTAAGATTCTTAGAGCAGCAGAAGTAATTTGTAGGCTTATGGACGACATAGTTTCCAACAAGGTGGATAAGCAAGTTCAAGCCTACTTTGACGAGGCAGAATGGTGTAATAAGAAGTACATTCCAACAATGGAGGAATATCTATCTGTGTCTATGATATCAAGTTGTTATGCCCTCATTTCAATTATGATGTCTGTGGGCATGCCTGGCGATGCTGTCACTGAGGAAGACTTTCAATGGCTGCTTAAACGACCTAAGATTCTTCAAGCAGCAGAAGTAATTTGTAGGCTCATGGACGATATAGTTTCCAACGAGATTGAGAAACAGAAGGAGCAGGTGGCAACAGGCTTAGAATGCTATACAATACAACATGGAGTGACGGAGGAGGAGGCCATTCATGTTTTTCACAATCTGGTGTCAGAAGCATGGAAGGACATAAACCAAGAGTTTCTGAAACCAACTAACGTGAAAATGAACCTGCTTTCGCGAATTCTTTACGCGACCCAAGTTATAGATGAATTGTACAAAGACGAAGATGGTTATACCCTCGTTGGAAAGTCAGTCAAGGATGGGATCTCGGCCTTATTCATCAATCCACTATCTCTCTAA 1797 39.45 VKEKEVRKLKENVRNMLVGSANDSFHQLKLIDDIQRLGVAYHFEGEIKEALENTYATYFDCSFNNFFIDLNHVSLCFRLLRQQGINISSDIFNTFKDEKGVFKESLATDVEGLLSLYEAAFLGVRGETVLDEALLFSTTHLKVFRKRESNTLSCMVAKALRRPLRKSLVRVNAPYFISIYKDLPSYNETLLRFAISDFNLLQSTHKNELSNLRKWWRDLDFGNRLPFARDRMVECFFWTTSIGWEPEFYLMRRILTKLLYLVSIMDDIYDSYGTFAELSLFTPAMKRWSRESMNNLPEYMKIYHEAVLDCFEEIEEFMIKQGTLYRMFYAKEAVDKQVQAYFDEAEWCNKKYIPTMEEYLSVSMISSGYALISIIWSVGLPGDAVTEEFFQWLLNRPKILRAAEVICRLMDDIVSNKVDKQVQAYFDEAEWCNKKYIPTMEEYLSVSMISSCYALISIMMSVGMPGDAVTEEDFQWLLKRPKILQAAEVICRLMDDIVSNEIEKQKEQVATGLECYTIQHGVTEEEAIHVFHNLVSEAWKDINQEFLKPTNVKMNLLSRILYATQVIDELYKDEDGYTLVGKSVKDGISALFINPLSL 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4407928 4419546 + Bda025417.1 Bda07g00331 9221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00331 598 Gene3D Farnesyl Diphosphate Synthase 3 419 IPR008949 -
Bda07g00331 598 SUPERFAMILY Terpenoid synthases 422 596 IPR008949 -
Bda07g00331 598 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 4 182 IPR008930 -
Bda07g00331 598 SFLD Isoprenoid Synthase Type I 187 420 - -
Bda07g00331 598 SUPERFAMILY Terpenoid synthases 186 420 IPR008949 -
Bda07g00331 598 SFLD Terpene Cyclase Like 1 C Terminal Domain 187 420 IPR034741 -
Bda07g00331 598 Pfam Terpene synthase family, metal binding domain 191 421 IPR005630 GO:0000287|GO:0010333|GO:0016829
Bda07g00331 598 PANTHER OS04G0344100 PROTEIN-RELATED 4 420 - -
Bda07g00331 598 PANTHER (-)-GERMACRENE D SYNTHASE-LIKE 419 585 - -
Bda07g00331 598 CDD Terpene_cyclase_plant_C1 3 595 IPR044814 GO:0010333|GO:0016102
Bda07g00331 598 PANTHER (-)-GERMACRENE D SYNTHASE-LIKE 4 420 - -
Bda07g00331 598 PANTHER OS04G0344100 PROTEIN-RELATED 419 585 - -
Bda07g00331 598 Pfam Terpene synthase, N-terminal domain 3 160 IPR001906 GO:0010333|GO:0016829
Bda07g00331 598 Gene3D Farnesyl Diphosphate Synthase 420 597 IPR008949 -
Bda07g00331 598 Gene3D - 21 185 IPR036965 GO:0010333|GO:0016829
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00331 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] K14183 vvi:100264159 439.884
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00743 Bda07g00331 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00331 Bda-Chr7:4407928 Bda07g00405 Bda-Chr7:5155584 1.22E-71 dispersed
Bda07g00326 Bda-Chr7:4375321 Bda07g00331 Bda-Chr7:4407928 1.97E-41 proximal
Bda12g00853 Bda-Chr12:38315317 Bda07g00331 Bda-Chr7:4407928 7.83E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g96 . . Bda07g00331 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g403 . . Bda07g00331 . . . . Bma13g00950 . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0113 . . . . . . Blo07g00921 . Bda05g00743 . . Bpe03g00808 . . . . . . Cma16g00830 . . . . . . . . . . . . . . . . . . Lsi05g00657 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00331 Bda_Chr07 FPKM 0.354586 0.0 0.0 0.0 0.0 0.0 0.0 2.364207 3.817503