Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00333 ATGAAGGGCGAGTCGTCGGGGCTGATCATAGGAATTTCGATAGGGGTTGTAATTGGAGTTCTTTTGGCTGCTTTTGGTTTGTTCTGCTTCAAGTATCATAGAAAAAGATCTCAAATAGGGAATAGTAGTTCAAGGAGAGCGACTACAATTCCTATTCGTACAAATGGCGTCGATTCTTGTACTATTTTATCGGATTCGACGTTAGGTCCGGATGAATCGCCAAGAAAGTCTGCTTGGAATGGAAAATCCCTTTGGCTTGAAGGATTTAGACGAAGTAATGTCGTCTCAGCATCAGGAATTCTTGAATATACTTATAAGGATCTGCAAAAGGCAACTTTTAATTTTACGACAGTGATAGGAAATGGTGCGTTCGGTCCTGTTTACAAAGCTCAAATGTCGACTGGTGAGACTGTAGCCATTAAAGTTCTTGCATCGAATTCTAAGCAGGGAGAGAGAGAGTTTCAGGCCGAGGTTATGTTATTAGGAAGGTTGCACCATAGAAACCTTGTGAATTTAATTGGATACTGTGCTGAAAAGGGCCAGCATATGCTTGTATATGTCTACATGAGTAATGGCAGCTTAGCTTCTCATTTATACAGCGAAAAAATGGAAGTTTTAAGCTGGGATTTGCGGGTGCATATAGCTTTAGACGTAGCAAGAGGATTGGAATATCTCCACGACGGTGCCATTCCTCCGGTAATTCACCGCGATATCAAGTCTTCGAATATTCTCTTGGATCAATCCATGAGAGCGAGGGTCGCTGATTTCGGGTTATCGAGAGAAGAGATGGTGGACAAGAATGCAGCCAATATCAGGGGAACCTTCGGGTATCTTGACCCAGCTGCTATGGATTCAGATGGAAAAGTAGGATGGGAGGAAATAGTGGATTCCCGACTAGACGGGAATTTCAATTTGCAAGAGCTAAACGAGGTTGCAGCTCTTGCGTACAAGTGCGTCAATCGAAACCCGAGAAAAAGACCGATCATGCGCGACGTGGTTCAAGTGCTGTCACGGATTTTAAATTCAAGGCATAGTCGAAAGAACCACAAAAAATCCTCATCTTCAACGACAGATGAGGTCGTTCTCAATTTGGATCAATCGGACGGTAAGAATTCGATTGCTAGACACGGTAGAGACGAATCTATGGATAGTGTACTGGAAACTTGTGAAGTTTAG 1176 43.03 MKGESSGLIIGISIGVVIGVLLAAFGLFCFKYHRKRSQIGNSSSRRATTIPIRTNGVDSCTILSDSTLGPDESPRKSAWNGKSLWLEGFRRSNVVSASGILEYTYKDLQKATFNFTTVIGNGAFGPVYKAQMSTGETVAIKVLASNSKQGEREFQAEVMLLGRLHHRNLVNLIGYCAEKGQHMLVYVYMSNGSLASHLYSEKMEVLSWDLRVHIALDVARGLEYLHDGAIPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKNAANIRGTFGYLDPAAMDSDGKVGWEEIVDSRLDGNFNLQELNEVAALAYKCVNRNPRKRPIMRDVVQVLSRILNSRHSRKNHKKSSSSTTDEVVLNLDQSDGKNSIARHGRDESMDSVLETCEV 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4430724 4433552 + Bda025419.1 Bda07g00333 9223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00333 391 PANTHER OS01G0750732 PROTEIN 289 387 - -
Bda07g00333 391 Gene3D Phosphorylase Kinase; domain 1 86 188 - -
Bda07g00333 391 Pfam Protein tyrosine and serine/threonine kinase 114 268 IPR001245 GO:0004672|GO:0006468
Bda07g00333 391 ProSiteProfiles Protein kinase domain profile. 113 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda07g00333 391 Gene3D Transferase(Phosphotransferase) domain 1 286 364 - -
Bda07g00333 391 Gene3D Transferase(Phosphotransferase) domain 1 189 285 - -
Bda07g00333 391 SUPERFAMILY Protein kinase-like (PK-like) 99 336 IPR011009 -
Bda07g00333 391 SMART serkin_6 113 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda07g00333 391 MobiDBLite consensus disorder prediction 368 391 - -
Bda07g00333 391 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 1 289 387 - -
Bda07g00333 391 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 1 6 280 - -
Bda07g00333 391 MobiDBLite consensus disorder prediction 371 385 - -
Bda07g00333 391 PANTHER OS01G0750732 PROTEIN 6 280 - -
Bda07g00333 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00333 - - - qsu:112025008 585.489
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00333 Bda-Chr7:4430724 Bda12g00218 Bda-Chr12:2227373 2.10E-107 dispersed
Bda07g00333 Bda-Chr7:4430724 Bda07g01039 Bda-Chr7:12250829 2.85E-116 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g406 Blo03g00588 . Bda07g00333 . . . . . . . Cma01g01158 Cma09g00918 . Car09g00834 . Cpe06g00738 Cpe02g00744 Bhi09g01956 . . . . Mch11g1145 . . . . . . . . . Cone9ag0109 . . Lsi04g01252 . Chy04g01023 . . . . . Bpe11g00519 . . Bma14g00362 . Cmo01g01212 Cmo09g00912 Cma04g01014 . Car04g00865 Car16g00570 Cpe14g00713 Cpe01g00836 . . . . . . . Cla05g01548 . . . . . . . . . Cme04g00791
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001530 1 4 1 1 1 1 4 1 2 2 2 1 4 2 1 4 0 0 5 2 2 1 0 0 1 2 0 0 0 1 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69701 PF07714 PK_Tyr_Ser-Thr 9.90E-37 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00333 Bda_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.997023 0.167923