Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00336 ATGTTGTTGAGCATTTGCAACATAGACTTGACACAACTGGTAGAAGCTGTTAATGAGCTTGACGTGTGTTCATCGGAGGACAGATCATATTGGACCAATGAAATCAATTTCGAATGTCTATCCTTGGCCAAAGAAAATATTTGGAGGATATTAAGTAGGCTTCATCTTCATTCTCAGGCAAAGCAAACTCTTCGAGATTGTTTAAAAATTTTACACGAAAAAGAGGATTCCCAAGTTTACTACTCCAAACATTCTGACCCAATATTTCCAAAACCCAGCATTGAAAGAAGAAATGTAGGTTCTAGATTGCTTCAAAGCATAGCAGAGGTGCCTGCTTCTGCACCTTTGGAGTCACCATTTTCTAGTCCTGAAGTCTCTCCAAGCCCGGATCCTTCCACCGAGAACAAAGGAAAGAATCATAAACCTGTTATAATTGCTGTTGTCGTTACAGCTTCAGTGACATTCATTGTTGCTGCACTGTTGTTTCTTTGCTGTACTAAATTTTGTAAGAATGATGAAAGGCCTCTTCTTAGCTTGAGCATGAGTGACTTCTCTATTGTTCTATCCAGGAAGGGAAGCCGGAGCAATCAGTCGAATATCTCAAATCAGCAGAAGAAATATTCTGATAGTAATTTTCATGCTGCGTCTAATGGTCGTACGTCTGTCCAAGAATTCCAAGTAAATGAAGCCTTTGCAGGTGTTGACAAATCAAATGTAGAATCTTTGGGCGGTTTGGGTAATATTAATGGACAAGCAATGCCGACTTTGAAGCCTCCGCCTGGGAGAATACAGGTTTCATCCTCTATACCCCTTCCTCCCCAGCCAGCTTCTTCTTTTAAGACTCCTAGTAATGCTGGTCCTCCACCTCCGCCTCCAGCAACACCTCCACTGCCTGCCTTCAGCACCACCTCCCCTTGTGGCTCCACTGCCGAAACCACCTTCGGCAGCTCCTTTGAGACCTCCGGCGAATGCTGGCCATCCACCTGGACCTCCACCACTGCCTCCTCCTGTACCCACTGGGAAGGCTGGTATTACATGCTCCACCCCCACCAAAAATGGGCGGCTTTTCCTCCTCGGCCACCTCAACAAATTTCTCTAGGTTCTAATGCAGCTCGACCTTCAAAACCTCCATTAAATCCAGCTTCTAGTGACGGAAAATCCATGGAGGATGATTCAGATGCTCCCAAAGCCAAACTCAAGCCATTTTTCTGGGACAAGGTCCTAGCCAACCCTGGTCATTCAATGGTCTGGCATCAGATTAAGTCTGGATCATTCCAGTTCAACGAGGAAATGATAGAGAGTCTTTTTGGTTATACTCCTGTTGATAAAAACAAAAACGAACGAAAGAAAGAGACATCTTCACAAGATCCTTCCACCCATTATATTCAGATCATCGATTCGAAAAAAGCACAAAATCTATCTATTCTTCTGCGGGCATTAAATGTGACAAAAGAAGAAATTTGTGATGCAATTATTGAAGGGAATGAACTTCACGCCGAACTGATACAGAATTTATTGAAAATGGCACCAACGGCAGAAGAGGAACTGAAACTGAGGCTCTTCGGTGGCGAAGTTTCGCAACTTAGTCTGGCCGATCGATTCCTAAAAGCCTTGGTCGACATCCCATTTGCTTTCAAACGCTTGGAAGCATTACATTTCATGTGCACTCTTCAGGAGGATGTCACCACGATTAAAGAGTCATTTGCTGCGTTAGAGGCATGCCACTCTTCCCCCCATTTCCAACTCAAAAACAGCAGGCTGTTCCTCAAACTCTTAGAAGCTGTTCTTAAAACTGGAAATCGTATGAACGACGGAACCTTTCGAGGAGGTGCACAAGCTTTCAAATTAGACACCCTTTTAAAGTTGTCGGATGTTAAAGGAACGGATGGGAAGACCACACTGTTACTTTTTGTTGTTCAGGAGATAATTCGCTCCGAAGGCGCACGAGCTGCTCGAACTGGCTCCAAATCGGATGACTCCATTGATGAAGCTTCTCTCAACACACAGGATTACTACAGAAGCCTTGGCCTTCAAGCCATTTCGGGTTTGGGAAACGAATTGGAAAACGTAAAGAGAGCAGCCGGGATTGATTTGGATGGTCTGAGAGGAACTATCACAAAACTCAGCCACGCACTGGCAAAAACCCAAGAATTTCTCAATACCAATATGAAGAATCTCGAGGAAAATAGTGAATTCCACAGAACATTGAAGAGCTTTGTGCAGAATGCTGAAGTTGATATTATGACTCTAGTTGAAGAAGAAAAGAGGATTATGAGTTTAGTGAAAAGCACAGGTGATTACTTCCATGGAAATACCAGCAAAGACGAGGGATTGCGATTATTCCTCATCGTCCGTGATTTTTTGATAATGGTAGATAAAGCGTGTAGGGAAGTGAGTCAAGCGCCGAAAAAAATGCATAAAAAGACAACATCTTCTCCTGATATTCGTGAAGCTCAGTCACCGGCAGCTTCCTCCGATCTTAATTTGCGGCTTTTTCCAGCAATCAAAGATCGGAGAATTGACAATTCTAGCTCAGACGAGGAGGATCCATAG 2553 43.67 MLLSICNIDLTQLVEAVNELDVCSSEDRSYWTNEINFECLSLAKENIWRILSRLHLHSQAKQTLRDCLKILHEKEDSQVYYSKHSDPIFPKPSIERRNVGSRLLQSIAEVPASAPLESPFSSPEVSPSPDPSTENKGKNHKPVIIAVVVTASVTFIVAALLFLCCTKFCKNDERPLLSLSMSDFSIVLSRKGSRSNQSNISNQQKKYSDSNFHAASNGRTSVQEFQVNEAFAGVDKSNVESLGGLGNINGQAMPTLKPPPGRIQVSSSIPLPPQPASSFKTPSNAGPPPPPPATPPLPAFSTTSPCGSTAETTFGSSFETSGECWPSTWTSTTASSCTHWEGWYYMLHPHQKWAAFPPRPPQQISLGSNAARPSKPPLNPASSDGKSMEDDSDAPKAKLKPFFWDKVLANPGHSMVWHQIKSGSFQFNEEMIESLFGYTPVDKNKNERKKETSSQDPSTHYIQIIDSKKAQNLSILLRALNVTKEEICDAIIEGNELHAELIQNLLKMAPTAEEELKLRLFGGEVSQLSLADRFLKALVDIPFAFKRLEALHFMCTLQEDVTTIKESFAALEACHSSPHFQLKNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGTDGKTTLLLFVVQEIIRSEGARAARTGSKSDDSIDEASLNTQDYYRSLGLQAISGLGNELENVKRAAGIDLDGLRGTITKLSHALAKTQEFLNTNMKNLEENSEFHRTLKSFVQNAEVDIMTLVEEEKRIMSLVKSTGDYFHGNTSKDEGLRLFLIVRDFLIMVDKACREVSQAPKKMHKKTTSSPDIREAQSPAASSDLNLRLFPAIKDRRIDNSSSDEEDP 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4440760 4444333 - Bda025422.1 Bda07g00336 9226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00336 850 ProSiteProfiles Formin homology-2 (FH2) domain profile. 389 817 IPR015425 -
Bda07g00336 850 MobiDBLite consensus disorder prediction 362 376 - -
Bda07g00336 850 MobiDBLite consensus disorder prediction 300 325 - -
Bda07g00336 850 Pfam Formin Homology 2 Domain 391 791 IPR015425 -
Bda07g00336 850 MobiDBLite consensus disorder prediction 799 830 - -
Bda07g00336 850 Gene3D Formin, FH2 domain 395 823 IPR042201 -
Bda07g00336 850 MobiDBLite consensus disorder prediction 192 214 - -
Bda07g00336 850 PANTHER FORMIN-RELATED 99 307 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Bda07g00336 850 PANTHER FORMIN-RELATED 350 848 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Bda07g00336 850 MobiDBLite consensus disorder prediction 267 281 - -
Bda07g00336 850 MobiDBLite consensus disorder prediction 250 325 - -
Bda07g00336 850 MobiDBLite consensus disorder prediction 119 133 - -
Bda07g00336 850 SMART it6_source 389 806 IPR015425 -
Bda07g00336 850 SUPERFAMILY Formin homology 2 domain (FH2 domain) 287 805 - -
Bda07g00336 850 MobiDBLite consensus disorder prediction 799 813 - -
Bda07g00336 850 MobiDBLite consensus disorder prediction 282 299 - -
Bda07g00336 850 MobiDBLite consensus disorder prediction 356 394 - -
Bda07g00336 850 PANTHER FORMIN-LIKE PROTEIN 3 99 307 - -
Bda07g00336 850 PANTHER FORMIN-LIKE PROTEIN 3 350 848 - -
Bda07g00336 850 MobiDBLite consensus disorder prediction 114 138 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00336 - - - jre:109014354 783.482
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g00336 Bda09g00382 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00343 Bda-Chr6:5477832 Bda07g00336 Bda-Chr7:4440760 4.90E-06 dispersed
Bda07g00336 Bda-Chr7:4440760 Bda13g00633 Bda-Chr13:7306308 0 dispersed
Bda10g01006 Bda-Chr10:44236078 Bda07g00336 Bda-Chr7:4440760 3.65E-92 transposed
Bda07g00336 Bda-Chr7:4440760 Bda09g00382 Bda-Chr9:4883741 1.91E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g414 Blo03g00585 Blo03g01433 Bda07g00336 Bda09g00382 . Bpe08g01143 . . . . Cma01g01155 Cma09g00921 . Car09g00837 . Cpe06g00740 Cpe02g00746 Bhi09g01953 . . . Hepe01g1315 . . . . . . . . . . Cone9ag0106 . . Lsi04g01249 . Chy04g01020 . . . . . Bpe11g00522 . Bma07g01317 Bma14g00359 . Cmo01g01208 Cmo09g00918 . . . Car16g00567 . . . . . . . . . Cla05g01545 Cam05g1653 Cec05g1657 Cco05g1695 Clacu05g1644 Cmu05g1539 Cre05g1650 . . . Cme04g00799
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g01477 . 397 850 FH2 protein (formin) Gene Family AT3G25500 58.5 1.3e-133 474.6
Bda14g01277 . 431 867 FH2 protein (formin) Gene Family AT3G25500 60.0 1.7e-133 474.2
Bda08g01073 . 394 826 FH2 protein (formin) Gene Family AT3G25500 52.6 3.4e-110 396.7
Bda07g01671 . 463 718 FH2 protein (formin) Gene Family AT3G25500 69.9 3.2e-92 337.0
Bda11g01477 . 415 871 FH2 protein (formin) Gene Family AT2G43800 53.8 3.5e-124 443.0
Bda14g01277 . 444 879 FH2 protein (formin) Gene Family AT2G43800 54.5 8.1e-121 431.8
Bda13g00633 BCT 159 433 FH2 protein (formin) Gene Family AT4G15200 50.7 2.1e-56 216.9
Bda07g00336 BCT 379 528 FH2 protein (formin) Gene Family AT4G15200 62.9 3.1e-47 186.4
Bda07g00336 BCT 391 848 FH2 protein (formin) Gene Family AT5G54650 63.7 9.9e-159 557.8
Bda13g00633 BCT 299 756 FH2 protein (formin) Gene Family AT5G54650 63.4 1.0e-155 547.7
Bda06g00343 BCT 284 727 FH2 protein (formin) Gene Family AT5G54650 59.9 1.2e-148 524.2
Bda08g01073 . 425 831 FH2 protein (formin) Gene Family AT5G54650 52.0 1.1e-109 394.8
Bda11g01477 . 429 835 FH2 protein (formin) Gene Family AT5G54650 50.5 4.1e-104 376.3
Bda09g00382 BCT 187 493 FH2 protein (formin) Gene Family AT5G54650 58.9 6.1e-92 335.9
Bda14g01277 . 35 886 FH2 protein (formin) Gene Family AT5G67470 54.0 1.6e-212 736.5
Bda11g01477 . 35 878 FH2 protein (formin) Gene Family AT5G67470 55.1 1.0e-208 723.8
Bda08g01073 . 430 829 FH2 protein (formin) Gene Family AT5G67470 53.4 2.5e-109 393.7
Bda07g01671 . 467 735 FH2 protein (formin) Gene Family AT5G67470 54.4 1.2e-63 241.9
Bda10g01006 . 250 727 FH2 protein (formin) Gene Family AT1G59910 50.4 1.0e-118 424.9
Bda10g01006 . 127 724 FH2 protein (formin) Gene Family AT1G70140 50.2 6.9e-137 485.0
Bda11g01477 . 413 835 FH2 protein (formin) Gene Family AT3G05470 50.2 4.6e-108 389.4
Bda14g01277 . 448 850 FH2 protein (formin) Gene Family AT3G05470 50.4 4.7e-105 379.4
Bda11g01706 BCT 4 162 FH2 protein (formin) Gene Family AT1G31810 59.4 1.3e-39 162.5
Bda14g00861 BCT 1539 1858 FH2 protein (formin) Gene Family AT5G07650 71.6 2.6e-123 439.9
Bda03g00096 . 354 676 FH2 protein (formin) Gene Family AT5G07650 60.7 6.8e-103 372.1
Bda11g01706 BCT 4 153 FH2 protein (formin) Gene Family AT5G07650 70.2 8.7e-50 195.7
Bda14g00861 BCT 1449 1853 FH2 protein (formin) Gene Family AT5G07770 63.1 1.6e-133 473.4
Bda03g00096 . 353 669 FH2 protein (formin) Gene Family AT5G07770 58.4 5.1e-95 345.5
Bda11g01706 BCT 4 146 FH2 protein (formin) Gene Family AT5G07770 66.7 1.1e-44 178.3
Bda14g00861 BCT 1463 1858 FH2 protein (formin) Gene Family AT3G32400 64.3 3.1e-138 488.8
Bda03g00096 . 353 676 FH2 protein (formin) Gene Family AT3G32400 73.5 2.1e-126 449.5
Bda11g01706 BCT 4 153 FH2 protein (formin) Gene Family AT3G32400 62.9 2.7e-41 166.8
Bda11g01706 BCT 4 153 FH2 protein (formin) Gene Family AT2G25050 65.6 1.8e-43 175.3
Bda14g00861 BCT 1464 1858 FH2 protein (formin) Gene Family AT5G07780 59.9 2.4e-116 416.0
Bda03g00096 . 353 676 FH2 protein (formin) Gene Family AT5G07780 56.7 2.6e-86 316.2
Bda11g01706 BCT 4 153 FH2 protein (formin) Gene Family AT5G07780 70.2 1.9e-44 177.2
Bda11g01706 BCT 4 160 FH2 protein (formin) Gene Family AT5G07740 75.3 2.0e-56 218.8
Bda14g00861 BCT 1538 1867 FH2 protein (formin) Gene Family AT5G07760 69.3 6.7e-120 428.7
Bda03g00096 . 353 676 FH2 protein (formin) Gene Family AT5G07760 61.2 2.8e-102 370.2
Bda11g01706 BCT 6 149 FH2 protein (formin) Gene Family AT5G07760 69.0 4.6e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001056 4 3 4 4 4 2 4 2 2 2 2 2 4 2 2 3 2 4 4 2 2 2 2 2 3 2 2 3 3 2 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00336 Bda_Chr07 FPKM 1.895455 0.909524 0.0 0.264364 1.082285 1.482847 1.546535 0.946071 0.607723