Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00337 AAAATTACAGTTTTGAAAATGGTTGGGACGGAAGCTAATGGAAGAACACGGATGGCATTTTCAGTCGTCAATGGCGGACGAAACGGGTGTATGGACAGCGCTCCAACAAGCCTTGCCGGCTCCGATTACGGTGGCGTAGAGTTCTCCAGAGAAGACGTTGAAGCTTTGTTGAATGAGAAATTGAAAAGAAAAGACAGATTCAATCTCAAGGAAAAATGTGACAACATGGCGGAATACATTAAAAGGCTTAAATTATGCATCAAATGGTTTCAAGATCTTGAATCTGCCTATTTATTAGAGCAAGAGAGGCTGCATGATCGATTGGAATCAGCCGAGCTGAAATGCTCCGAAATGGAGATATTATTGGAGAATAAGGAAGAAGAGTTGAATTTAATCATTGTTGAGCTTAGAAAGAACTTCGAGTGTTTGCAAGAGAAGTTTACGATAGAAGAATCAGATAAGTTGGTTGCAATGGACTCTCTAGCGAAAGAGAAAGAGGCTAGACAGAATATTGAGAGGTCACAGGCCTCCATCGTGGAAGAACTTGGTAGAGCCCAAAGAGATCTTTCAAGTGCAAATCAGAAGATTACATCGCTTAATGATATGTACAAGCGGTTGCAAGAGTACATCACGAGTTTGCAACAATATAATGGAAAACTTCATACGGAGCTGTCGACAGTCGAAGACGACCTGAAACGAATAGAGAAAGAGAAGGCTTCAATGATGGAAAATCTCAGCTTGTTAAAGGGTCAACTTACTTTGTCCAAAGCTTCTCATGATGACGCTGTGAAGCAAAAAGAAGCGATAGTGGATGAAGTTTCGTGTCTTAGACGAGAATTACAGCAAGTGAGGGATGATCGAGATCGTCAACTTTCACAGGTTCATTCGTTGACAGTTGAAGTCGTCAAGTACAAAGAGAGTGCAGAAACGTGCAATTGTGAGGTAGAAATTTTGAAAACTAAGACAAGTGAATTAGAGGCAACATGTTCTTGGCAAAATGACGAACTGAAGGCCTTGAATAATCATCTATCTGTTGCAGAAAGCAAACTCCAGGTGTCTGATTTATCTGCAATAGCGACGAAGGCAGAGTTTGAAGAGCAAAAGAGACTTATAATCGAGTTACAAAATCGTTTGGATGATGCAGAAACAAAGCTTACAGAAGGAGAAAAGTTGCGAAAGAAGTTACATAATACCATCTTGGAACTTAAAGGGAACATTCGGGTGTTCTGTAGAGTTCGCCCTTTAATACCCGAAGATGGTTTTAGCTCAGAAGGAAAAATTTTCTCTTATCCCTCGTCAGTTGAAGCCCTTGGACGAGGAATTGACGTAATGCAAAATGGGCAGAAACATTCTTTTGCATTCGATAAAGTATTTATGCCCGTTTGCATTTTTGCTTATGGACAAACTGGATCGGGCAAGACCTACACGATGATGGGTGGGCCCGGCCTCAAAGAACTAAGAGGGTTGATACCTCGATCGTTAGAACAAATATTTCAAACGAGACAATCTCTTCAACCTCAAGGTTGGAAATATGAAATGCAGGTGTCGATGCTGGAAATCTATAACGAAAATATTCGTGATTTGCTCGGGATTCATCGATCGTATTCAGATTCTTCACGACTTGAGAATTGTAGTCCCGGAAAGCAATATGGGATCAAACACGACGTAAGTGGAAACACGCATGTCTCTGAACTTACGATCGTGGATGTTCGTAGCGTGAAAGAGGTCTCATTTCTTTTAGATCAAGCTGCTCGTAGCAGATCTGTTGGGAAAACCCAAATGAATGAGGAATCTTCAAGAAGTCATTTTGTGTTCACTCTTCGAATATTCGGTATAAACGAGGGCACGGATCAACAAGTGCAAGGCGTTTTGAATTTGATTGATCTTGCCGGGAGCGAACGGCTTTCCAAGAGCGGATCAACCGGTGACCGGCTGAAAGAAACTCAAGCTATTAATAAAAGTCTGTCATCTTTAAGTGATGTTATATTTGCTTTGGCAAAGAAGGAAGAGCATGTACCATTCAGAAACTCAAAACTTACATATCTTCTTCAGCCGTGTCTCGGTGGCGATTCAAAGACGTTGATGTTTGTAAATATATCTCCCGACCCTTCTTCGCTCGGCGAATCTCTCTGCTCCCTCCGCTTCGCCGCTCGTGTTAATGCTTGCGAAATCGGAACTCCTCGCCGTCAAACAAATTCACGCTGA 2205 41.86 KITVLKMVGTEANGRTRMAFSVVNGGRNGCMDSAPTSLAGSDYGGVEFSREDVEALLNEKLKRKDRFNLKEKCDNMAEYIKRLKLCIKWFQDLESAYLLEQERLHDRLESAELKCSEMEILLENKEEELNLIIVELRKNFECLQEKFTIEESDKLVAMDSLAKEKEARQNIERSQASIVEELGRAQRDLSSANQKITSLNDMYKRLQEYITSLQQYNGKLHTELSTVEDDLKRIEKEKASMMENLSLLKGQLTLSKASHDDAVKQKEAIVDEVSCLRRELQQVRDDRDRQLSQVHSLTVEVVKYKESAETCNCEVEILKTKTSELEATCSWQNDELKALNNHLSVAESKLQVSDLSAIATKAEFEEQKRLIIELQNRLDDAETKLTEGEKLRKKLHNTILELKGNIRVFCRVRPLIPEDGFSSEGKIFSYPSSVEALGRGIDVMQNGQKHSFAFDKVFMPVCIFAYGQTGSGKTYTMMGGPGLKELRGLIPRSLEQIFQTRQSLQPQGWKYEMQVSMLEIYNENIRDLLGIHRSYSDSSRLENCSPGKQYGIKHDVSGNTHVSELTIVDVRSVKEVSFLLDQAARSRSVGKTQMNEESSRSHFVFTLRIFGINEGTDQQVQGVLNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEEHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPDPSSLGESLCSLRFAARVNACEIGTPRRQTNSR 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4454082 4458136 + Bda025423.1 Bda07g00337 9227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00337 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 720 IPR027417 -
Bda07g00337 734 ProSitePatterns Kinesin motor domain signature. 622 633 IPR019821 GO:0003777|GO:0005524|GO:0007018
Bda07g00337 734 Gene3D Kinesin motor domain 348 724 IPR036961 -
Bda07g00337 734 PANTHER KINESIN-LIKE PROTEIN KLP-3 8 460 - -
Bda07g00337 734 PANTHER KINESIN-LIKE PROTEIN KLP-3 461 733 - -
Bda07g00337 734 PANTHER KINESIN-LIKE PROTEIN 8 460 - -
Bda07g00337 734 PANTHER KINESIN-LIKE PROTEIN 461 733 - -
Bda07g00337 734 Coils Coil 182 209 - -
Bda07g00337 734 Pfam Kinesin motor domain 461 720 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda07g00337 734 Coils Coil 364 398 - -
Bda07g00337 734 CDD KISc_C_terminal 403 724 - -
Bda07g00337 734 Coils Coil 266 293 - -
Bda07g00337 734 Coils Coil 108 146 - -
Bda07g00337 734 Coils Coil 217 251 - -
Bda07g00337 734 ProSiteProfiles Kinesin motor domain profile. 405 722 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda07g00337 734 SMART kinesin_4 403 730 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda07g00337 734 Pfam Microtubule binding 387 460 IPR031852 GO:0008017
Bda07g00337 734 PRINTS Kinesin heavy chain signature 672 693 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda07g00337 734 PRINTS Kinesin heavy chain signature 458 479 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda07g00337 734 PRINTS Kinesin heavy chain signature 623 641 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda07g00337 734 PRINTS Kinesin heavy chain signature 592 609 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00337 K10405 KIFC1; kinesin family member C1 - csv:101215636 1080.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00337 Bda-Chr7:4454082 Bda09g01292 Bda-Chr9:44679989 0 dispersed
Bda07g00337 Bda-Chr7:4454082 Bda08g00516 Bda-Chr8:5209324 1.08E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g417 Blo03g00584 . Bda07g00337 . . . . . . . Cma01g01154 Cma09g00922 . Car09g00838 . Cpe06g00742 Cpe02g00747 Bhi09g01950 . . . . . . . . . . . . . Cone6ag0089 Cone9ag0105 . . Lsi04g01248 . . . . . . . Bpe11g00523 . . Bma14g00358 . Cmo01g01207 Cmo09g00919 . . . Car16g00566 . . . . . . . . . Cla05g01542 Cam05g1650 Cec05g1655 Cco05g1694 Clacu05g1643 Cmu05g1538 Cre05g1648 . . . Cme04g00801
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006975 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00337 Bda_Chr07 FPKM 103.054207 114.841766 9.200687 8.524931 10.781816 9.779657 9.558342 0.171498 0.158493