Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00338 ATGGTTTCACCAGAAACCACTAATTGGCTCTACGACTACGGAGTGATCGAAGATATCCCTGTCCATAATGGGAATTTCTCTGTTTCAAATTCTGGGTTTTCTTGGCCTGTGCATGCCTTGAATGGCTCATCTAATGTCAGCATGGAAATCGATGAGTCATTGATAAATTCAGATTGCCCCCAGAAATCATGCCTTAAAAAGAGGGTTAGATCTGAATCAAGTTCTGTATCCAGCTCCAAAGCATGCAGAGAGAAGTTGAGGAGAGACAGGCTGAATGACAAGTTTCTGGAATTGGGCTCTATTCTGGATCCCGGAAGACCCCCCAAAACAGACAAGGCTACAATTTTAGTTGATGCTGTTCGAATGGTGACTCAATTACAAGGCGAAGCCCAGAAGTTAAAGGACTCGAATTTAAGACTTCAGGAGAAGATTAAAGAGTTGAAGGCTGAGAAGAATGAGCTCAGGGATGAAAAGCAGAGGCTGAAGGCAGAAAAAGAGACAATGGAGCATCAATTGAAGAACATGAATTCTCAGCCCAGCTTCCTGCCTCCAGCGCCCGCAATCCCAGCTGCTTTTGCTGCTCAAGGGCAAGCTCCTGGCAACAAGTTGGTGCCTTTCATTACCTACCCCGGAGTGGCAATGTGGCAGTTCATGCCTCCTGCTGCAGTGGACACCTCGCAGGATCACGTTCTCCGCCCACCCGTTGCTTAA 711 46.98 MVSPETTNWLYDYGVIEDIPVHNGNFSVSNSGFSWPVHALNGSSNVSMEIDESLINSDCPQKSCLKKRVRSESSSVSSSKACREKLRRDRLNDKFLELGSILDPGRPPKTDKATILVDAVRMVTQLQGEAQKLKDSNLRLQEKIKELKAEKNELRDEKQRLKAEKETMEHQLKNMNSQPSFLPPAPAIPAAFAAQGQAPGNKLVPFITYPGVAMWQFMPPAAVDTSQDHVLRPPVA 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4458922 4461708 + Bda025424.1 Bda07g00338 9228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00338 236 CDD bHLH_AtILR3_like 80 155 - -
Bda07g00338 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Bda07g00338 236 Coils Coil 123 178 - -
Bda07g00338 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 146 IPR036638 GO:0046983
Bda07g00338 236 PANTHER BHLH TRANSCRIPTION FACTOR 1 236 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Bda07g00338 236 Pfam Helix-loop-helix DNA-binding domain 79 127 IPR011598 GO:0046983
Bda07g00338 236 Gene3D - 78 152 IPR036638 GO:0046983
Bda07g00338 236 SMART finulus 81 132 IPR011598 GO:0046983
Bda07g00338 236 PANTHER TRANSCRIPTION FACTOR ILR3 1 236 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda07g00338 Bda12g00887 CCT
Bda05g00737 Bda07g00338 CCT
Bda07g00338 Bda12g00887 ECH
Bda05g00737 Bda07g00338 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00338 Bda-Chr7:4458922 Bda13g00632 Bda-Chr13:7301859 2.13E-68 dispersed
Bda06g00968 Bda-Chr6:28070388 Bda07g00338 Bda-Chr7:4458922 1.80E-21 transposed
Bda12g00887 Bda-Chr12:39604560 Bda07g00338 Bda-Chr7:4458922 6.76E-115 wgd
Bda05g00737 Bda-Chr5:55743085 Bda07g00338 Bda-Chr7:4458922 4.37E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16096 PF00010 HLH 3.80E-10 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00338 - - jre:108993453 352.058