Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00344 GTTAGCACTTTGGTTTTAGCTGAACTCGAAGGCGGTTCAATCAGTTCTGCATCTGTTTCTGCAATAGCTGCTGCTGATTCCTTCGGTAAGGACAATTCCATTTCAGTGTTGTTGGCTGGATCAGGTCCTTCGCTTCACGAAGCTGCTGACCAAGCTGCCTCACGCCTTTCACCGATTTCTCAGGTACTTGTGGCAGATTCAGACAAATTCGCATATTCTCTTGCAGAGCCGTGGGCTAAACTAGTCCAATTAGTTCAACACAGAGGCAGCTTTTCTCACATAATTTCTGCTGCGAGTTCTTTTGGGAAAAACATTCTTCCACGTGCAGCTGCTCTTTTAGATGTTTCTCCGATCACCGATGTGATTCAAATATTGGAATCACATCTATTTGTGAGGCCAATATATGCAGGCAATGCACTTGCTACTGTTCGATACACTGGCTCTGATCCTTGTATGTTGACCATTAGATCTACATCTTTTCCTGTGGCCTCGACCTCTGCTGAATCAAAATCTAACAAGGCGTCTATTTTTCAGGTTGATCTTTCAGCCTTTGGTGACGACTCTATTGGCAAATCTAGATACGTGAAACACACATCTCAAGATAAAGAACGACCCGACCTAGGAACTGCTCGTGTTGTTGTAACAGGAGGGCGGGCTTTGAAAAGTGCGGAGAACTTCAAAATGATTGATAAGCTTGCAGGAAAACTTGGGGCAGCTGTTGGAGCTACTCGTGCTGCCGTTGATGCTGGTTTTGTTCCCAATGAGCTTCAGGTTGGACAAACTGGAAAGATTGTTGCACCAGAATTGTATATGGCTTTTGGTGTATCAGGAGCCATTCAACACTTGGCCGGGATGAGAGACTCTAAAGTCATTGTAGCTGTAAATAAAGATGCAGATGCACCAATATTCCAGGCTGCTGATTATGGGCTCGTCGGTGATCTCTTTGAGGTGATACCGGAGTTGTTAGAGAAGTTACCTGAGAGAAAATAA 990 44.65 VSTLVLAELEGGSISSASVSAIAAADSFGKDNSISVLLAGSGPSLHEAADQAASRLSPISQVLVADSDKFAYSLAEPWAKLVQLVQHRGSFSHIISAASSFGKNILPRAAALLDVSPITDVIQILESHLFVRPIYAGNALATVRYTGSDPCMLTIRSTSFPVASTSAESKSNKASIFQVDLSAFGDDSIGKSRYVKHTSQDKERPDLGTARVVVTGGRALKSAENFKMIDKLAGKLGAAVGATRAAVDAGFVPNELQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQAADYGLVGDLFEVIPELLEKLPERK 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4488907 4491307 + Bda025432.1 Bda07g00344 9234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00344 329 Gene3D - 202 327 - -
Bda07g00344 329 Pfam Electron transfer flavoprotein domain 3 179 IPR014730 -
Bda07g00344 329 PANTHER ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT ALPHA, MITOCHONDRIAL 2 327 - -
Bda07g00344 329 PIRSF Electra_flavoP_a 1 329 IPR001308 GO:0009055|GO:0050660
Bda07g00344 329 PANTHER ELECTRON TRANSFER FLAVOPROTEIN ALPHA 2 327 IPR001308 GO:0009055|GO:0050660
Bda07g00344 329 Gene3D HUPs 2 201 IPR014729 -
Bda07g00344 329 SUPERFAMILY DHS-like NAD/FAD-binding domain 205 325 IPR029035 -
Bda07g00344 329 CDD ETF_alpha 2 169 IPR033947 -
Bda07g00344 329 Pfam Electron transfer flavoprotein FAD-binding domain 206 286 IPR014731 -
Bda07g00344 329 ProSitePatterns Electron transfer flavoprotein alpha-subunit signature. 269 295 IPR018206 -
Bda07g00344 329 SMART ETF_2 3 188 IPR014730 -
Bda07g00344 329 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 2 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00344 K03522 fixB, etfA; electron transfer flavoprotein alpha subunit - fve:101300128 491.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g01263 Bda-Chr4:63153515 Bda07g00344 Bda-Chr7:4488907 3.87E-95 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g462 Blo03g00578 . Bda07g00344 . . . . . . . . Cma09g00935 . Car09g00848 Sed07g2661 Cpe06g00752 . Bhi09g01931 Tan01g4520 Cmetu04g0908 . Hepe01g1300 Mch11g1164 . . . . . . . . . Cone9ag0097 . . Lsi04g01229 . . . . . . . Bpe11g00529 . . Bma14g00352 . . Cmo09g00932 . . . . . . . . . . . . . Cla05g01520 Cam05g1633 . Cco05g1669 Clacu05g1622 Cmu05g1520 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009641 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00344 Bda_Chr07 FPKM 8.779009 10.59126 12.282576 13.744946 8.624506 9.802258 11.00181 12.419739 11.396954