Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00348 ATGACGCACCTTTGCAGAAAGTTGGCTCACTTCGATTTCCGGTGGAGTTTGGTGGGACGGATTTCGGTGGTCCGTGATTTTTTCAGAATCATTTGGGAAAGGATCCTTGTTTGTTCGATTGGCAGGCCTGCTAGATACCGCAGATTGTCTGGTCGGGCTTCTCCGGGGAAACCGGAAGTTGGTCAGCCGTCGGAGGAACTCGAGACGGCTTGTAGTGGACGTGATGCGGATTCTGATTTGGTTATGCTGAAGATTAGTTTGCTGGGTGATTGTCGTGTTGGAAAAACAAGTTTTGTGATCAAATACGTTGGAGATGAGCAGGAGAAGAGAAGTATGGACATGGCAGGATTAAATTTAATGGATAAAACACAAAATGTTCAGGGTACGAGGATTTCATTTAGTATATGGGACGTTGGAGGGGATTACAGTGCTCGAGATCATATTCCAATAGCCTGTAAAGATGCTGTGGCAATTTTATTCATGTTTGATTTGACCAGTCGGTGTACACTAAATAGCGTTGTTGGTTGGTTTGCAGAGGCAAGAAAGTGGAATCAGACGGCAGTTCCCATACTGATAGGAACGAAATTTGATGACTTTGTTAGATTACCTCCGGATCTTCAATGGACGATCATCACTCAGGCAAGAAAATACACCAAGGCTATGAATGCAACTCTCTTCTTCTCAAGTGCAACCCACAACATAAATGTCAACAAGATCTTCAAATTCATCTTGGCTAAACTCCTTGGCTTGCCGTCGACCGTCGAGCGAAATCTCACCACTGGGGAGCCGATCATTGACTTTTGA 804 44.78 MTHLCRKLAHFDFRWSLVGRISVVRDFFRIIWERILVCSIGRPARYRRLSGRASPGKPEVGQPSEELETACSGRDADSDLVMLKISLLGDCRVGKTSFVIKYVGDEQEKRSMDMAGLNLMDKTQNVQGTRISFSIWDVGGDYSARDHIPIACKDAVAILFMFDLTSRCTLNSVVGWFAEARKWNQTAVPILIGTKFDDFVRLPPDLQWTIITQARKYTKAMNATLFFSSATHNINVNKIFKFILAKLLGLPSTVERNLTTGEPIIDF 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4511629 4518604 - Bda025436.1 Bda07g00348 9238

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00348 267 Gene3D - 73 261 IPR027417 -
Bda07g00348 267 PANTHER - 53 266 - -
Bda07g00348 267 SMART rab_sub_5 83 250 - -
Bda07g00348 267 PRINTS Transforming protein P21 ras signature 225 247 - -
Bda07g00348 267 PRINTS Transforming protein P21 ras signature 185 198 - -
Bda07g00348 267 PRINTS Transforming protein P21 ras signature 83 104 - -
Bda07g00348 267 PRINTS Transforming protein P21 ras signature 124 146 - -
Bda07g00348 267 SMART rho_sub_3 85 249 IPR001806 GO:0003924|GO:0005525
Bda07g00348 267 PANTHER PROTEIN TEM1 53 266 IPR017231 -
Bda07g00348 267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 260 IPR027417 -
Bda07g00348 267 ProSiteProfiles small GTPase Rab1 family profile. 75 267 - -
Bda07g00348 267 Pfam Ras family 84 247 IPR001806 GO:0003924|GO:0005525
Bda07g00348 267 PIRSF GTPase_Tem1 3 267 IPR017231 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00348 K07976 RAB; Rab family, other - qsu:111998924 404.445
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00348 Bda-Chr7:4511629 Bda08g00419 Bda-Chr8:4256391 5.97E-15 dispersed
Bda07g00348 Bda-Chr7:4511629 Bda13g00619 Bda-Chr13:7223594 5.58E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g87 . . Bda07g00348 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001148 1 3 3 2 3 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 3 2 2 2 3 2 5 5 1 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00348 Bda_Chr07 FPKM 1.694616 1.457005 0.891334 1.294663 1.031826 0.918362 1.765072 0.448509 0.33476