Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00359 ATGATGCCTCACATGTCGCAGATGGCGTTGAATCAGATGGCCCAGCAGTATCCGCAGCAGCCGATACCTCCCCAGCAGCAGTGGATGATGATGCCGCCGCCGCAGCAGCAGCAGCAGCACGCGCCGTCACAGCCGATGCCTCCGCCTGCTGGATGGACTCCGCAGCCGGTACCTCCCCCTATCTCTGTTCCCGCGCAGCAGTTTCCCCCAGCTACGGGATCCGGTGAGGTTCGTTCCCTTTGGATCGGGGATTTGCAGCAGTGGATGGATGAGAACTATCTCGTCTCCTGTTTCGGTCAGACTGGTGAGGTTATAACTGCTAAGGTTATTCGCAATAAGCTTTCTGGAATGCCTGAAGGTTATGGGTTTGTTGAGTTTGTAAGCAGGGCTGCTGCAGAGAGGACTTTACAAACGTTCAATGGTACATTGATGCCAAATTCTGACCAGAATTTTCGACTCAACTGGGCTACTCTAAGTGCCGGTGAAAGACGCCAAGACGATGGTCTTGATTATACAATTTTTGTTGGAGATTTGGCTGCCGATGTCACTGATTATACCCTTCAAGAAACATTTAAAGCAGTGTATCACTCAGTGAAGGGGGCAAAAGTTGTCACTGATCGGTCCACTGGGCGATCCAAGGGTTATGGGTTTGTGAGGTTTGGTGATGAGAATGAACAGCTACGTGCCATGACTGAAATGAATGGTATGTATTGTTCTACTAGGCCCATGCGAGTTGGCCCTGCTGCATCAAAGAAATCTATTGGTGATGTTGGACAACCTCAGAAAGTTACCTACGAGAATACTCAAGGCCATCCGGGGGAGAATGATCCAAATAATACAACAATATTTGTTGGAGGCTTGGATACTAGCGTTACTGATGAGCTATTGAGACAAGTTTTTTCCCAATTTGGTGAGCTTGTCCATGTGAAAATTCCTGCTGGAAAGCGCTGTGGTTTTGTTCAGTTTGTTAACAGAACTTGTGCAGAGCAAGCTATATCCATGCTGAATGGAACTCAATTAGGTGGTCAAAATATTCGACTTTCCTGGGGGCGTAGTCCCACTAATAAACAGGGTCAGCCAGATCAGGCTCAGTGGAATAGCGGATACTATGGGCATGCACAAGGATATAACACATATGGATATGTTCCAAATCCCCAAGATCCTAACGTGTATTACGGAGGGTACCCTGGATATGGAAATTACCAGCAGCCTGGTGCATACCAGCAGCCACAGCAGTGA 1239 48.35 MMPHMSQMALNQMAQQYPQQPIPPQQQWMMMPPPQQQQQHAPSQPMPPPAGWTPQPVPPPISVPAQQFPPATGSGEVRSLWIGDLQQWMDENYLVSCFGQTGEVITAKVIRNKLSGMPEGYGFVEFVSRAAAERTLQTFNGTLMPNSDQNFRLNWATLSAGERRQDDGLDYTIFVGDLAADVTDYTLQETFKAVYHSVKGAKVVTDRSTGRSKGYGFVRFGDENEQLRAMTEMNGMYCSTRPMRVGPAASKKSIGDVGQPQKVTYENTQGHPGENDPNNTTIFVGGLDTSVTDELLRQVFSQFGELVHVKIPAGKRCGFVQFVNRTCAEQAISMLNGTQLGGQNIRLSWGRSPTNKQGQPDQAQWNSGYYGHAQGYNTYGYVPNPQDPNVYYGGYPGYGNYQQPGAYQQPQQ 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4590208 4594203 + Bda025444.3 Bda07g00359 9249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00359 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 352 IPR000504 GO:0003723
Bda07g00359 412 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 21 410 - -
Bda07g00359 412 MobiDBLite consensus disorder prediction 23 75 - -
Bda07g00359 412 CDD RRM1_SECp43_like 79 157 - -
Bda07g00359 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 241 IPR000504 GO:0003723
Bda07g00359 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 346 IPR000504 GO:0003723
Bda07g00359 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 146 IPR000504 GO:0003723
Bda07g00359 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 158 IPR000504 GO:0003723
Bda07g00359 412 Gene3D - 257 361 IPR012677 -
Bda07g00359 412 Gene3D - 77 157 IPR012677 -
Bda07g00359 412 SMART rrm1_1 172 246 IPR000504 GO:0003723
Bda07g00359 412 SMART rrm1_1 79 154 IPR000504 GO:0003723
Bda07g00359 412 SMART rrm1_1 281 348 IPR000504 GO:0003723
Bda07g00359 412 CDD RRM3_NGR1_NAM8_like 279 350 - -
Bda07g00359 412 Gene3D - 170 246 IPR012677 -
Bda07g00359 412 MobiDBLite consensus disorder prediction 38 66 - -
Bda07g00359 412 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 21 410 - -
Bda07g00359 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 250 IPR000504 GO:0003723
Bda07g00359 412 CDD RRM2_SECp43_like 170 249 - -
Bda07g00359 412 SUPERFAMILY RNA-binding domain, RBD 41 158 IPR035979 GO:0003676
Bda07g00359 412 SUPERFAMILY RNA-binding domain, RBD 268 379 IPR035979 GO:0003676
Bda07g00359 412 SUPERFAMILY RNA-binding domain, RBD 170 255 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00359 - - - jre:108993632 548.895
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00359 Bda-Chr7:4590208 Bda08g00827 Bda-Chr8:12514962 4.87E-123 dispersed
Bda10g00883 Bda-Chr10:43282626 Bda07g00359 Bda-Chr7:4590208 8.90E-35 dispersed
Bda15g00040 Bda-Chr15:1849466 Bda07g00359 Bda-Chr7:4590208 1.84E-11 dispersed
Bda01g00111 Bda-Chr1:17078961 Bda07g00359 Bda-Chr7:4590208 5.12E-160 transposed
Bda12g00903 Bda-Chr12:39764547 Bda07g00359 Bda-Chr7:4590208 0 wgd
Bda05g00725 Bda-Chr5:55622836 Bda07g00359 Bda-Chr7:4590208 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g502 . . Bda07g00359 . . . . Bma13g01053 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g00546 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002064 4 5 3 6 2 2 0 1 1 0 0 2 2 2 2 3 2 6 1 2 1 2 2 2 1 2 2 3 2 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00359 Bda_Chr07 FPKM 95.314026 98.966263 59.911232 59.803963 32.250294 36.17643 32.222721 419.871613 469.506989