Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00364 ATGTTTAAAGGATCTTTCACTGGCCTGACGATGGCGTCTCTCATATGCAAAGAGGCTGTGTCTTTCATGGAGGTTCTTGTTTCAGCCGTTTTTCGTGGAATTGGGTTTTTGATTACGCTGTCAGAGAGAATAGCTTTTGCTGCATTTGCATGCTTTCTTGCTGTAGGAGGTTCATTAATGGGGACTATCTTTGGAGCCATCAATGGACAGAGGAAGGGGTTTGGGTTCCTAAATGGGGCTGGAATAGGACTCATTACAGGGGCATTTGTAGCCATTCAATTGCTTGAATTTGCTGATGAACGTCCTTCATTGTCCAAAGTCGATCTTTTGGCTAGTTTGGTCAATGGAAATGCATTCGTTGAATTTTGGAGGATTTTGTTGGCATTTCAGATGGTTGAATCTATATATAGAGAAATTTCAGACATTACAGATTCTGGGTCTGAAGGATTAACAAAAAGCTGTGTCCAAAATTTGCCAGTGTTTGAGCTTCACTCATGCAGATCAAAGAATGAACCACAAAGCAATGGCTTTCGTTGCCCTATTTGTCTGGAGGATTTGGAAGATGGAGATATTGTAAGAAGTCTTCCAGATTGTGAACATTTCTTCCATTTGGAATGCATAGACAACTGGCTTCATTTACGTGGATCTTGTCCTACATGCAGAAAAATCATCCCGGTTCATAATTCAGCCCAACATTAG 699 41.06 MFKGSFTGLTMASLICKEAVSFMEVLVSAVFRGIGFLITLSERIAFAAFACFLAVGGSLMGTIFGAINGQRKGFGFLNGAGIGLITGAFVAIQLLEFADERPSLSKVDLLASLVNGNAFVEFWRILLAFQMVESIYREISDITDSGSEGLTKSCVQNLPVFELHSCRSKNEPQSNGFRCPICLEDLEDGDIVRSLPDCEHFFHLECIDNWLHLRGSCPTCRKIIPVHNSAQH 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4643936 4646551 - Bda025449.1 Bda07g00364 9254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00364 232 ProSiteProfiles Zinc finger RING-type profile. 179 221 IPR001841 -
Bda07g00364 232 CDD RING-H2_PA-TM-RING 179 221 - -
Bda07g00364 232 Pfam Ring finger domain 178 221 IPR001841 -
Bda07g00364 232 SUPERFAMILY RING/U-box 169 227 - -
Bda07g00364 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 226 IPR013083 -
Bda07g00364 232 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 223 - -
Bda07g00364 232 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 9 223 IPR044523 -
Bda07g00364 232 SMART ring_2 179 220 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00364 - - - dzi:111301598 202.601
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00364 Bda-Chr7:4643936 Bda11g01819 Bda-Chr11:53376368 4.46E-28 dispersed
Bda07g00364 Bda-Chr7:4643936 Bda13g00201 Bda-Chr13:2562059 3.64E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g512 . Blo03g01452 Bda07g00364 . . Bpe08g01122 . . . . . Cma09g00954 . Car09g00868 . . . Bhi09g01646 . . . Hepe01g1274 . . . . . . . . . . . . . . Csa07g01092 . . . . . . . . Bma07g01295 Bma14g00336 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014791 1 0 1 2 1 0 1 0 0 0 0 0 1 1 1 0 0 2 1 0 1 0 1 0 0 0 0 2 0 1 17
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00364 Bda_Chr07 FPKM 2.923611 4.174713 1.503864 1.433574 4.674711 4.060472 3.889398 0.0 0.0