Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00383 ATGGCTTCTTCTGATGATGATGCTGAGGCTGTGCTAGTATCTGTTTCAAATTACGACTTTGCAGATTATAAGGACGAACCAGTGTCATTCTCTGTTTTGCCAATTCTATGGGATGAGAGAGAGAGAGTAGACGAGTGGCAGGAAAAAATATTCCTACGTGGAACTACTGATAATGGACTGCAAAAAGTATTTAAGCAAGTCATAGGATGGAGATTTGATCTTTGTAATGCGAATCCTGAGTTTTTTGTGCTCTCTAAGGAGAACGCATGGATAAAGCTTCAGAAGCCGAGGAAAAGCTTTGAGGGCATCATCAGGACTACGCTAATCACTGTTAACTGCCTTCATTTTTTGAAGAAAAACCCTGAAACGATTGGCAAGCCTTTGTGGGATCATTTGTTTAAAGTCTTCAGTACATATGAAGTTAGACCTTCTGCAAATGATCTAATGGACCAGATGTCTTTGATTAACGAAACCGTTGAGAGAGATGAAGACTTGGCAAACACTAAGTTTTTACTCATATTGTTGGAGGGAAAATCAAACAAGTGGAAACTAGCTGATGAGGATATGAATCCTGCCTCAAACACTAGCTTCATAGTTGACGATTCAGATGAAGATATTGGTGATGGTGCAGAAGAAGATGAAAGTGATGATGACGTGTTTGATTCTGTTTGCGCCTTCTGTGATAATGGCGGTGATATTTTATGCTGTGAGGGGAGGTGCTTGAGGTCCTTTCATGCAACTGAAGAAGCTGGAGAAGAATCTCTATGTGCATCTCTTGGATTTTCTCCAGAGGACGTAGAAAGAATAGAGAACTTCTTTTGTAAGAATTGCCAATCTAAACAGCACCAATGCTTTGTTTGTGGAAAACTGGGTTCCTCTGACAAATCTTCTGGTGCTGAGGTCTTTCCTTGCGTGAATGCAACCTGCGGTTACTTTTATCATCCTCGTTGTATTGCAAAACTGCTTCACTGGGACAGCAAAGTTGCTGCAGAAGCGCTTGAGAAAAATATTGCAGCTGGTGAATCTTTCACTTGTCCTATTCACAAATGCTGTGTTTGTAAACAAGGGGAGAATAAGAGAGTTTATGAGTTGCAGTTTGCTGTCTGCAGGCGCTGTCCCAAGGCATACCACAGAAAATGCTTACCTTGGGAGATTGCCCTGGACGATCCAGATGAAAAAGGAATAACGATCAGGGCTTGGGAGGATCTATTACCAAATCGAATATTAATATATTGCTTAAACCATGAAATGCTTCCTAAACCGGTTGGAACTCCTGTAAGAGACCATATTAAATTTCCTGGTCTTGAATGGAAAGAACTAGGTATTCGAGCTGCACTGCAGAAGCTAGAAGATGGATGTAGCATCGAGGATGCAGAAGCTGTATGTGATCCTGTGGTTCTTACCCAATTTTTTAAGTGGAAGAACAAGCTTAAAGTGTATCTTTCGCCTTTTCTTCATGGTATGCGCTACACATCATTTGGCCGGCATTTCACCAAAGTGGAGAAACTTCAAGAGATTGTTGATAAGCTCCACTGGTATGTTCAAAGCGATGACATGGTAGTGGACTTTTGTTGTGGTGCTAATGATTTCAGTATTCTAATGAAGAAAAAGCTTGAAGATACAGGGAAAAAGTGCTTCTATAAGAACTACGATTTTATCCCACCGAAGAATGATTTTAATTTTGAAAAGAGGGATTGGATGACTGTTGAGCCAAATGAGTTGCCTGCAGGGTCAAAGTTGTCCTTTTATCTTCCTGGATCTGTTGATGCAAACGACAAACAAATGGATCAGTGGAATATTAGGCCACCTCCTCTGTATCTTTGGAGCCGTCATGATTGGGCCGCTAAGCACAAACACATTGCTCAAAAGTATGGTCACCTGCAGGAAGAAGAGTCAGAAAAGTATACTGAAACTTCTGTTATTCAGAATCTTGCTGAAAGTCCTGGACTTTTTAATGATAAGCCTAACATGAGTGATGATCCCTTACAAGCCAGACCAGAAGATTTCAGAGATGAGGTAATTGCCACTGAAACTCATAAAGGAGTCTCTTCTCAGTGTTACGGTGACAAAGAAAGCCCTGAGACTCATAGGCAGCACAATGTTGAGGTTGGTGAGAAATCAAGGAAGAGAAGGCGTGGTCAAGGAAAAGTTGGACAAAGGATGGATGATCTATTAGACTATGATAAACAAAATTCTAGGAGGCCTCCCGCAGATGCCAAATGTGAAGAAATGTCCATTTTTTCTCCAAATGCTGTGGATAGCAGATCTTCAATCGAAGGTGTGGCATCCAAATCCATGGAGATGCCCCAGCAGCACAATCCTCATCATTTGAACAATCCTCAGCATTTGAATAATCCTCCATTGCCGGAGAGCCATATGTATGGCTCAAACCTACAATTTAGCACTTCTTATGGTGGACCTCATACAACAATGAATGATGAGTTTGACCGAAGATATGGTGAGGATCCTTACTTGATCGATCCAATATATGGATTACCAGGCATAGAAAGTCCAGGTTCATATTATGGAGCCAGAACTTTTGATGAACCTTTTATGGGGCGCATAAGAGGCATGGAAGAAGTCCCTGGTTACAGAGCAAATGTTGGTGATGGCGAAGACAGATACAGAAAAGATATACGCTCACAGATTCGTCTTTATGGTCAACAAAATCCTGATCCCTTGAGAACTAACTATCTAGAAGGGCAAGATCCAGGATATGACCAGATGGGATCATTGCCCCCTACTTATGGACAAATGGGTTCGGAAGCATCATCTTACAGGAGCGGTTCAGCCATGCAGCGATATGCTCCTCGATTGGATGAGCTAAATCACACTAGAATGGGCTCTTTTGGCTTGGCCTCACAAATGAGCAGAGATGGTATATCTGATTACAGACATCCCCCACCTTTGTATCGAGGTGGTGTTCCACCCTTCCCTTCTGGGCCCCCTCCTCGACCATTCTATCCGCATCATAATTCACCAGGTTGGCTCAATGAGTAG 3000 42.13 MASSDDDAEAVLVSVSNYDFADYKDEPVSFSVLPILWDERERVDEWQEKIFLRGTTDNGLQKVFKQVIGWRFDLCNANPEFFVLSKENAWIKLQKPRKSFEGIIRTTLITVNCLHFLKKNPETIGKPLWDHLFKVFSTYEVRPSANDLMDQMSLINETVERDEDLANTKFLLILLEGKSNKWKLADEDMNPASNTSFIVDDSDEDIGDGAEEDESDDDVFDSVCAFCDNGGDILCCEGRCLRSFHATEEAGEESLCASLGFSPEDVERIENFFCKNCQSKQHQCFVCGKLGSSDKSSGAEVFPCVNATCGYFYHPRCIAKLLHWDSKVAAEALEKNIAAGESFTCPIHKCCVCKQGENKRVYELQFAVCRRCPKAYHRKCLPWEIALDDPDEKGITIRAWEDLLPNRILIYCLNHEMLPKPVGTPVRDHIKFPGLEWKELGIRAALQKLEDGCSIEDAEAVCDPVVLTQFFKWKNKLKVYLSPFLHGMRYTSFGRHFTKVEKLQEIVDKLHWYVQSDDMVVDFCCGANDFSILMKKKLEDTGKKCFYKNYDFIPPKNDFNFEKRDWMTVEPNELPAGSKLSFYLPGSVDANDKQMDQWNIRPPPLYLWSRHDWAAKHKHIAQKYGHLQEEESEKYTETSVIQNLAESPGLFNDKPNMSDDPLQARPEDFRDEVIATETHKGVSSQCYGDKESPETHRQHNVEVGEKSRKRRRGQGKVGQRMDDLLDYDKQNSRRPPADAKCEEMSIFSPNAVDSRSSIEGVASKSMEMPQQHNPHHLNNPQHLNNPPLPESHMYGSNLQFSTSYGGPHTTMNDEFDRRYGEDPYLIDPIYGLPGIESPGSYYGARTFDEPFMGRIRGMEEVPGYRANVGDGEDRYRKDIRSQIRLYGQQNPDPLRTNYLEGQDPGYDQMGSLPPTYGQMGSEASSYRSGSAMQRYAPRLDELNHTRMGSFGLASQMSRDGISDYRHPPPLYRGGVPPFPSGPPPRPFYPHHNSPGWLNE 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4816791 4838353 - Bda025468.4 Bda07g00383 9273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00383 999 MobiDBLite consensus disorder prediction 716 740 - -
Bda07g00383 999 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 372 IPR013083 -
Bda07g00383 999 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 1 436 - -
Bda07g00383 999 MobiDBLite consensus disorder prediction 958 999 - -
Bda07g00383 999 CDD PHD2_NSD 283 348 - -
Bda07g00383 999 SMART PHD_3 350 416 IPR001965 -
Bda07g00383 999 SMART PHD_3 283 349 IPR001965 -
Bda07g00383 999 SMART PHD_3 223 278 IPR001965 -
Bda07g00383 999 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 1 436 - -
Bda07g00383 999 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 442 580 - -
Bda07g00383 999 MobiDBLite consensus disorder prediction 690 709 - -
Bda07g00383 999 MobiDBLite consensus disorder prediction 677 740 - -
Bda07g00383 999 MobiDBLite consensus disorder prediction 970 990 - -
Bda07g00383 999 MobiDBLite consensus disorder prediction 193 215 - -
Bda07g00383 999 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 442 580 - -
Bda07g00383 999 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 581 940 - -
Bda07g00383 999 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 280 IPR013083 -
Bda07g00383 999 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 581 940 - -
Bda07g00383 999 CDD PHD3_NSD 350 382 - -
Bda07g00383 999 MobiDBLite consensus disorder prediction 201 215 - -
Bda07g00383 999 Pfam Cytosine specific DNA methyltransferase replication foci domain 14 136 IPR022702 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00383 - - - pxb:103954568 719.539
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g591 Blo03g00537 . Bda07g00383 . . . . . . . Cma01g01105 . Car01g00978 . . . Cpe02g00796 Bhi09g01710 . . . . . . . . . . . . . . . Cone14ag1189 Cone15ag1208 Lsi02g01869 Csa07g00996 . . . . . . Bpe11g00561 . . . . Cmo01g01151 . . . . . . . . . . . . . . Cla09g02036 Cam09g2125 Cec09g2190 . . . . . . Chy01g01070 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003000 1 4 2 0 1 1 1 1 1 1 1 1 1 0 1 1 1 3 1 1 10 1 1 1 1 1 1 3 1 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00383 Bda_Chr07 FPKM 3.273504 5.432674 3.468163 3.075778 5.778292 3.965961 3.794006 19.622711 20.827724