Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00384 ATGGTTACAGACCAGGAGATATCTCAAGCTATACAATCCCTCTTCCACGACTCTTCTTCTGCATCTGCTTCAAACTCTAACACTTTCTCTACGCTTAACGGTGTCGTTCAGCAGCTGGAATCGAAGCTTGGCCTCGACCTCAACCACAAGGTCGACTTCATACGGGCTCAGATCCAATCGCTGTTCCGCTCTCACCCTCAACAACCATCTCCCCAACCTCCTCAGAAAGAGCATTTTCCTTTTCACCAAAACCCTAATTTTCAGTCGGGTCCTTTTCCTGTATCTTCCGCTTTCCAGATTTTCTCCTCTCCAGCCCCTCCTAGTAAGGCAGAAGCTCCCGTCTCTGTGACGGGCTCTGAGACGCCTAAAGAAAGTTCCCAGCCTAAAACTAAGAGAAGAGGTGGACCAGGGGGTCTGAATAAGCTTTGTGGAGTCTCACCTGAACTTCAAGCAATTGTTGGCCATCCAGAACTACCAAGGACGGAGATTGTGAAACAGCTATGGGCATACATAAGGAAAAACAATCTTCAAGATCCAAGTAACAAAAGGAAAATAATTTGCAATGACGAGCTGCGTTTGGTATTTGAAACTGACTGCACTGACATGTTCAAAATGAACAAGCTCCTCTCTAAACATATCATTCCTCTTGAGCCCACAAAACCTTCAAGCTCCAAGAAGCAAAGAGTGGAAATACAATCTGGCATTAGAATCTCTGAGTCCAGTCCTTCTGTGATTATATCTGAAGCGCTTGCAAATTTTTTTGGTGTTGATGGAAGGGAAATGCTCCAACAAGAGGTTCTTAGACGCATTTGGGAATATATTAAGGTTAATCATCTTGAGGATCCCTTGAATCCAATGGCGGTTTTGTGTGATTCCAAGCTTCAAGAGCTCTTTAGTTGCGAAAGCATCTCTGCTCTAGGTATTCCAGAAGTTTTAGGACGTCATCACATATTCCGAAGATCG 963 44.55 MVTDQEISQAIQSLFHDSSSASASNSNTFSTLNGVVQQLESKLGLDLNHKVDFIRAQIQSLFRSHPQQPSPQPPQKEHFPFHQNPNFQSGPFPVSSAFQIFSSPAPPSKAEAPVSVTGSETPKESSQPKTKRRGGPGGLNKLCGVSPELQAIVGHPELPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLSKHIIPLEPTKPSSSKKQRVEIQSGIRISESSPSVIISEALANFFGVDGREMLQQEVLRRIWEYIKVNHLEDPLNPMAVLCDSKLQELFSCESISALGIPEVLGRHHIFRRS 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4839515 4843543 + Bda033839 Bda07g00384 9274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00384 321 ProSiteProfiles SWIB/MDM2 domain profile. 239 318 IPR003121 -
Bda07g00384 321 Pfam DEK C terminal domain 28 62 IPR014876 -
Bda07g00384 321 ProSiteProfiles SWIB/MDM2 domain profile. 138 215 IPR003121 -
Bda07g00384 321 SUPERFAMILY SWIB/MDM2 domain 242 316 IPR036885 -
Bda07g00384 321 SMART swib_2 240 321 IPR019835 -
Bda07g00384 321 SMART swib_2 139 218 IPR019835 -
Bda07g00384 321 MobiDBLite consensus disorder prediction 98 141 - -
Bda07g00384 321 SUPERFAMILY SWIB/MDM2 domain 131 218 IPR036885 -
Bda07g00384 321 CDD SWIB-MDM2_like 143 213 - -
Bda07g00384 321 Pfam SWIB/MDM2 domain 245 315 IPR003121 -
Bda07g00384 321 Pfam SWIB/MDM2 domain 143 213 IPR003121 -
Bda07g00384 321 MobiDBLite consensus disorder prediction 64 86 - -
Bda07g00384 321 PANTHER - 115 317 - -
Bda07g00384 321 CDD SWIB-MDM2_like 244 315 - -
Bda07g00384 321 Gene3D SWIB/MDM2 domain 134 224 IPR036885 -
Bda07g00384 321 Gene3D SWIB/MDM2 domain 236 320 IPR036885 -
Bda07g00384 321 PANTHER - 1 89 - -
Bda07g00384 321 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 115 317 - -
Bda07g00384 321 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 1 89 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00384 K15223 UAF30, SPP27; upstream activation factor subunit UAF30 - csv:101217066 468.003
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g00384 Bda09g00413 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01423 Bda-Chr11:18833944 Bda07g00384 Bda-Chr7:4839515 1.61E-45 transposed
Bda12g00932 Bda-Chr12:40442666 Bda07g00384 Bda-Chr7:4839515 1.30E-06 wgd
Bda07g00384 Bda-Chr7:4839515 Bda09g00413 Bda-Chr9:5127291 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g593 Blo03g00535 Blo03g01462 Bda07g00384 Bda09g00413 . Bpe08g01108 . . . . Cma01g01104 . Car01g00976 . . . Cpe02g00797 Bhi09g01716 . . . . . . . . . . . . . Cone6ag0039 Cone9ag0041 . . Lsi02g01868 Csa07g00991 . . . . . . Bpe11g00562 . Bma07g01280 Bma14g00318 . Cmo01g01150 . . . . . . . . . . . . . . Cla09g02037 Cam09g2126 . . . . . . . Chy01g01071 Cme01g00979
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004875 2 3 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16097 PF02201 SWIB 4.90E-18 No_clan Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00384 Bda_Chr07 FPKM 18.46525 20.048336 18.43355 20.844841 5.422702 3.232069 4.452209 32.14209 30.343651