Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00395 ATGGGAAGCCTGAAAGCAATCTCGGAAGATCTTAAACTCATAGATCTTAAGAAGGAGAGTTTGAAGAAGGCTTTCGATGCGCTCCAAGCTCACTCCTCCCTCCTCTCTTCCTTCTCTCTCACTTGGTCCGACATTGAATGCCACTTCACCTCCGTTCAAAACTTTCTTACTGAGAAATATTATGTCCTCGAGTCGTTAGAATCGCAGCAGAATCTAGAAAAAAGGGATGAATTCGAGGATTCTATAACGCCTCGACCCGGACTGAAAGAGTTTTGTTTGCATATGGATGGAAGGGGTCTTAGAAATTACGTAATTGCCCAGCCGAAGGGTAAGGGCATCGACAGGATGGAGCTCGCCGGGGCCATTAATTGTGCTAAAGATCCGGCCAAGATGGTTTTAGATGCTATGGATGGTTTTTACAGCAAAAATTTGAACTGTAAACGTGATAAAGATCCGGACTTATGTTTTGTAAGGAGAACTTGTTTAGTTTTGTTGGAAACTTTGATGGATAGTAATCCGAGTGTAGGCTTTCATGTCAAGGAAAGAGCAAGGACTTTAGCATTGGAGTGGAAAAAACATATGAGCACAAATGGAGAAAATCCATTAGAGGCATTGGGCTTTTTGCATCTGGTGGCAACATATGGTTTGAAATCTGAATTTGATTTGGAAGAACTTGTTGAATATTTCACTATTATTGGTCGGTATCGGCAAGCTATCAAGTTGTGCAAGAACATTGGCTTGGGGAATAAAGTAGCCGATCTCGTTCAGAAACTAATACGAAAAAGCAAACAACTTCTGGCCGTCAAATTTATTTTTGAGTTTGAGCTGACTGACAAATTCCCACCAGTCCCCCTCTTGAAAGAGTACGTGAAGGAGTCCTCGGAGCTTGCTAAGAATGTTTGCAAGGAAGGACACAACTCTCTCAAGGCACAGAATGAAGCCACTTCCAAAGAAGTTGGTGCACTAAGATCCGTGATTAAAATGATTGAAGATTACAACCTTGATTCTGAGTATCCAAAAATAAATCTTGAGAAACGTATTGAGCTGTTGGAGAAGCAAAAGGCTGACAGAAAACGCCCTGCATCAGGTCCTCCAACAAAGACTAAGAAGCAGAAACTCGAACAAGTAAATTTACGGTCAATGAATCATATTCAAGTAAAGAAAAACGCCAAGTGGCAAACTGGAATACAACCCCTCAGAATGACTTCTAGACTGGGTTCTAGAGCAATGCCAAGTGTTATCACTGGTGGAAATTCTCTTGTTACTCCATATCAACAATCTCACATACACTCATCAGATTCCTTGTCAAATCATTCTGTTCCCTATGAAAGTTTGTCAGCAGTGCCACACGACATGGTGGGTTTGGCTCCCTCTGTGACCTCGTATCCCGGTGCATTTACGAGGGTATATGGTTTTGCAGAAAGCCATGAGGGGTCATCAAGCAATAGTACTCGAGCACCTATGCCCACCTATGGTGCATATGAAAATGGGGAGGAGGAACTGGATGAGTTCTATCACCAACCTGAAAAAAAGAGGCTCCTAAGTTCAGGTCAAGTCCAGTTTCTGGAGAAAAGCTTTGAAGTGGACAACAAGCTCGAGCCAGACAGAAAAACTCAGCTGGCGAAAGAAATAGGCCTGCAGCCCCGTCAGGTTGCAATTTGGTTTCAGAACCGCCGCGCTCGCTGGAAGTCGAAGCAACTGGAGAAGGATTTCGAGGTCTTACAATCCAACTATGATAGCCTAAAGGCTGATTATGAGAATCGCCTCAATGAGAAGGATAAGCTAAAGGCTGAGGTTCTCCTCCTCTCAGAAAAAGCTTCTTTTCATAGAGAAGGAGAATGTTAA 1845 43.04 MGSLKAISEDLKLIDLKKESLKKAFDALQAHSSLLSSFSLTWSDIECHFTSVQNFLTEKYYVLESLESQQNLEKRDEFEDSITPRPGLKEFCLHMDGRGLRNYVIAQPKGKGIDRMELAGAINCAKDPAKMVLDAMDGFYSKNLNCKRDKDPDLCFVRRTCLVLLETLMDSNPSVGFHVKERARTLALEWKKHMSTNGENPLEALGFLHLVATYGLKSEFDLEELVEYFTIIGRYRQAIKLCKNIGLGNKVADLVQKLIRKSKQLLAVKFIFEFELTDKFPPVPLLKEYVKESSELAKNVCKEGHNSLKAQNEATSKEVGALRSVIKMIEDYNLDSEYPKINLEKRIELLEKQKADRKRPASGPPTKTKKQKLEQVNLRSMNHIQVKKNAKWQTGIQPLRMTSRLGSRAMPSVITGGNSLVTPYQQSHIHSSDSLSNHSVPYESLSAVPHDMVGLAPSVTSYPGAFTRVYGFAESHEGSSSNSTRAPMPTYGAYENGEEELDEFYHQPEKKRLLSSGQVQFLEKSFEVDNKLEPDRKTQLAKEIGLQPRQVAIWFQNRRARWKSKQLEKDFEVLQSNYDSLKADYENRLNEKDKLKAEVLLLSEKASFHREGEC 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4911968 4915943 + Bda033840 Bda07g00395 9285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00395 614 CDD homeodomain 510 566 IPR001356 GO:0003677
Bda07g00395 614 PANTHER FRIGIDA-LIKE PROTEIN 3-RELATED 12 436 - -
Bda07g00395 614 ProSiteProfiles 'Homeobox' domain profile. 505 565 IPR001356 GO:0003677
Bda07g00395 614 ProSitePatterns 'Homeobox' domain signature. 540 563 IPR017970 GO:0000981|GO:0006355
Bda07g00395 614 SMART HOX_1 508 569 IPR001356 GO:0003677
Bda07g00395 614 SUPERFAMILY Homeodomain-like 491 567 IPR009057 -
Bda07g00395 614 Pfam Homeodomain 510 563 IPR001356 GO:0003677
Bda07g00395 614 Pfam Homeobox associated leucine zipper 565 605 IPR003106 GO:0006355|GO:0043565
Bda07g00395 614 Gene3D - 513 563 - -
Bda07g00395 614 PRINTS Lambda-repressor HTH signature 536 545 IPR000047 GO:0003677
Bda07g00395 614 PRINTS Lambda-repressor HTH signature 545 561 IPR000047 GO:0003677
Bda07g00395 614 PANTHER INACTIVE FRIGIDA-LIKE PROTEIN 2 12 436 - -
Bda07g00395 614 Coils Coil 564 598 - -
Bda07g00395 614 Pfam Frigida-like protein 83 360 IPR012474 -
Bda07g00395 614 MobiDBLite consensus disorder prediction 352 373 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00395 - - - cmo:103501231 468.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01707 Bda-Chr1:53074260 Bda07g00395 Bda-Chr7:4911968 3.04E-23 dispersed
Bda01g01708 Bda-Chr1:53092222 Bda07g00395 Bda-Chr7:4911968 1.42E-42 dispersed
Bda05g00820 Bda-Chr5:56712295 Bda07g00395 Bda-Chr7:4911968 2.89E-49 dispersed
Bda07g00395 Bda-Chr7:4911968 Bda15g00022 Bda-Chr15:1565106 6.37E-63 dispersed
Bda11g01458 Bda-Chr11:20384188 Bda07g00395 Bda-Chr7:4911968 7.77E-28 dispersed
Bda07g00395 Bda-Chr7:4911968 Bda14g00838 Bda-Chr14:6445781 5.75E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g611 Blo03g00526 . Bda07g00395 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g00573 . . Bma14g00306 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002407 4 3 3 3 1 1 2 1 2 2 1 1 2 2 2 1 1 4 2 2 1 1 0 2 2 1 2 5 2 2 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16098 PF07899 Frigida 1.40E-97 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00395 Bda_Chr07 FPKM 0.615801 0.32483 0.980691 0.92016 1.534225 0.800076 1.648397 0.732467 0.73313