Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00396 ATGGCGCTCGAGTGTTCCACTTTGGGTCCACCTACATACATTATTGGTTCAAAATCTCTCTCTTTCTCGTATTTCCGTCGCTGTATGCCATCGCCAGTGAAGATTGTGCAGAGTAACTATCGTTTCCCGATTCGTCTTTCCTCTAATTGCATTCAATTCCTCTGTTCTGGATGCTCGTCGAGTTCGAGAAGCTCAGGAATCCGATTTTCAGAACATAGAGCTCGTTTGAGACATCGAGTTGATGATTCTGAGATTTCAAGCAGTAGAAATGCTGTTTCGGATGCCAATTTAGGGTTTCTCAGAAGTTGGATGAAGCGTGGTGTTGTGTTGGCTGCAATGTTGACTGGATTTTTGGTATTTGGATGTAAAAAAGTTTTTGCAGTAGAAGATGTTGTCAATGCTGGCTATGGAGTATTTGGGCAGAGCATTTTGTTGCTCAGGAATGCTTGGCCCAAGATATCGCAGGTTCTCCAGGTTTTCAAGGAGCAGGGTTTGATTTTAGCCGCCCTTTTAGGCCTTTCAGCATTTTTTTCCATGGCTGAGACTTCAATTACCACTCTTTGGCCTTGGAAGGTACGTGAGTTAGCTGAAAAAGAATCTGAAGATGGTGTATTCAAAATGCTTAGTAGTGATGTTACTCGGTTCCTCACCACTATTCTCATTGGCACAACTGTGGTTAATATTGGAGCAACTGCTTTAGTCACAGAGGCTGCAACTGCAATATTTGGAGAAGCTGGTGTTACTGCAGCGACAGGAGTAATGACGGTAGCCATTTTACTTCTCACCGAACTCACTCCAAAAAGTATTGCCGTGCACAATGCAACTGAAGTTGCTAGAGTTGTGGTTAGGCCAGTTGCTTGGCTTTCTCTGGTTCTATATCCTGTTGGAAGAATTGTCACATTCATATCAATGGGGATGTTAAAAATGCTTGGCTTAAAAGGGCGAAGTGAGCCATATGTAACTGAAGAGGAGCTGAAATTGATGTTGCGAGGGGCCGAATTAAGTGGAGCTATTGAGGAGGAAGAACAGGATATGATAGAGAATGTTTTAGAAATAAAAGATACGCATGTTAGGGAGGTTATGACACCGCTAGTTGATGTGGTTGCAATAGACTCAAGTTCAACTCTCGTAGACTTTCACAACTTATGGCTGACACATCAATATTCCAGGGTACCCGTATTTGAGCAGCGTGTTGACAATATTGTGGGAATTGCATATGCAATGGATTTGCTTGATTATGTCCAGAAGGGCGACCTACTAGAGAGTACAACTGTCGGGGATATGGCTCATAAACCTGCTTACTTTGTCCCTGATTCAATGTCTGTCTGGAATCTTCTTAGAGAGTTTCGTATTCGGAAAGTGCACATGGCCGTTGTTCTTAATGAGTATGGAGGCACTGTGGGATTAGTGACCTTGGAAGATGTGGTTGAGGAAATTGTCGGTGAAATCTTTGATGAAAATGATTCAAAGGAGGAAATCCAAAAGAAAACTGGCTACATTGTGATGCGAGCAGAAGGTGTATATGACGTGGATGCAAACACTTCAATTGATCACCTCTCTGAAGATTTAAACATTAAAATGCCTGAGGGTCATCAATATGAGACGGTGTCGGGCTTCATCTGCGAAGCTTTTGGATATATCCCGAGGACTGGTGAGAGCATCAAAGTGGTTCTTGAAAAGGAAAATCAAGAAGACAACGAGGAGGCTACTCCGGACCACCAGAATCAGAAGGAAAAGCATCTGATTTTTAAGATTGAGATTCTAGCTGGAAATGCCAGAAAGGTGAGTGCAGTCCGATTCGAGAGCGTAAGTGATGACGAAGATGATGTCACAGTGCTGGAAAGCAAAGGGGTGGCTAGTTTGGTTCCCAAAATCATGAAGAGAAAATGGAGCAGTGATGAGGATTCAAGTAGTGTAGAAAATGGCGAGGATTCGTATTCACAGAAACCCATTGAAGGCGTCTTAAATGATGATCAAAACGACAATCAGACTTCATAA 1998 42.84 MALECSTLGPPTYIIGSKSLSFSYFRRCMPSPVKIVQSNYRFPIRLSSNCIQFLCSGCSSSSRSSGIRFSEHRARLRHRVDDSEISSSRNAVSDANLGFLRSWMKRGVVLAAMLTGFLVFGCKKVFAVEDVVNAGYGVFGQSILLLRNAWPKISQVLQVFKEQGLILAALLGLSAFFSMAETSITTLWPWKVRELAEKESEDGVFKMLSSDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVTAATGVMTVAILLLTELTPKSIAVHNATEVARVVVRPVAWLSLVLYPVGRIVTFISMGMLKMLGLKGRSEPYVTEEELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDSSSTLVDFHNLWLTHQYSRVPVFEQRVDNIVGIAYAMDLLDYVQKGDLLESTTVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGLVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRAEGVYDVDANTSIDHLSEDLNIKMPEGHQYETVSGFICEAFGYIPRTGESIKVVLEKENQEDNEEATPDHQNQKEKHLIFKIEILAGNARKVSAVRFESVSDDEDDVTVLESKGVASLVPKIMKRKWSSDEDSSSVENGEDSYSQKPIEGVLNDDQNDNQTS 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4932750 4942824 + Bda025485.1 Bda07g00396 9286

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00396 665 Gene3D - 498 599 IPR016169 -
Bda07g00396 665 SUPERFAMILY CBS-domain pair 344 483 IPR046342 -
Bda07g00396 665 Pfam Transporter associated domain 502 602 IPR005170 -
Bda07g00396 665 SUPERFAMILY FAD-binding/transporter-associated domain-like 499 608 IPR036318 GO:0050660
Bda07g00396 665 PANTHER BNAC03G73630D PROTEIN 1 653 - -
Bda07g00396 665 Gene3D - 336 491 IPR046342 -
Bda07g00396 665 ProSiteProfiles CBS domain profile. 428 486 IPR000644 -
Bda07g00396 665 SMART CorC_HlyC_2 501 604 IPR005170 -
Bda07g00396 665 ProSiteProfiles CNNM transmembrane domain profile. 156 342 IPR002550 -
Bda07g00396 665 PANTHER HEMOLYSIN-RELATED 1 653 - -
Bda07g00396 665 CDD CBS_pair_CorC_HlyC_assoc 356 477 IPR044751 -
Bda07g00396 665 Pfam Cyclin M transmembrane N-terminal domain 165 342 IPR002550 -
Bda07g00396 665 MobiDBLite consensus disorder prediction 628 665 - -
Bda07g00396 665 ProSiteProfiles CBS domain profile. 361 422 IPR000644 -
Bda07g00396 665 Pfam CBS domain 357 415 IPR000644 -
Bda07g00396 665 Pfam CBS domain 425 480 IPR000644 -
Bda07g00396 665 SMART cbs_1 366 415 IPR000644 -
Bda07g00396 665 SMART cbs_1 432 480 IPR000644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00396 - - - mnt:21392823 966.066
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g01167 Bda-Chr4:62330056 Bda07g00396 Bda-Chr7:4932750 2.75E-14 dispersed
Bda07g00396 Bda-Chr7:4932750 Bda14g01534 Bda-Chr14:25852674 1.15E-12 dispersed
Bda07g00396 Bda-Chr7:4932750 Bda15g00473 Bda-Chr15:7908185 4.76E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g623 . . Bda07g00396 . . . . . . . Cma01g01088 . Car01g00964 . . . . . . . . . . . . . . . . . . Cone6ag0023 Cone9ag0023 . . . . . . . . . . Bpe11g00574 . . Bma14g00305 . Cmo01g01134 . . . . . . . . . . . . . . Cla09g02052 Cam09g2140 Cec09g2207 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005841 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 2 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00396 Bda_Chr07 FPKM 10.970989 12.39283 5.650377 5.481118 36.03857 39.313324 36.568573 1.171505 0.930324