Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00397 ATGGTAGAGATTAATCGCGATGACGATGATGTCGATCTATGGCTGGAAATTCAAGAAGAAGCTCGATTTGATGTGCGGCAGGAACCAATTCTGTCAAATTATTATTGTAATTCAATCTTTTCGCACAAATCGTTGGAGAGTGCCCTAGCTAACCACCTCGCGATTAAATTGGGCAATTCCAGTCTTCCCAGCAACACCCTGTACGATTTGTTTCTTGATGAGTTTTCCAAGGATAAAGAAATTTTGAAGGCAGCCAAGTATGATTTGAGAGCTGTGAAGGAGCGAGATCCAGCCTGCATAAGCTTTGTCCATAGAAGAAAAGTGTTAGCTCTCTTGATTCAGAACCGAGTATCTGAGGTCTTCGCCGTTGACATTCATCCAGGAGCCAAAATCGGATGGGGAATTTTACTCGATCACGCCACCGGAGTCGTCGTTGGAGAGACGGCGGTCATCGGAAATAATGTTTCGATTCTGCATAATGTTACTTTAGGAGGAACCGGGAAGGCTTCAGGAGACAGACATCCGAAGATCGGCGATGGAGTTCTGATCGGGGCCGGAACTTGTATTTTGGGGAACATCAAGATTGGTGAAGGGGCAAAAATCGGAGCTGGTTCGGTGGTTTTGAAAGAAATTCCACCACGAACAACAGCAGTGGGAAATCCAGCTAGATTGGTAGGCGGCAAAGAGAATCCATTGAAGCTGGATAAGATTCCCAGTTTCACCATGGATCATACTTCTCACATAACAGAGTGGTCTGATTATGTTATCTAG 771 45.01 MVEINRDDDDVDLWLEIQEEARFDVRQEPILSNYYCNSIFSHKSLESALANHLAIKLGNSSLPSNTLYDLFLDEFSKDKEILKAAKYDLRAVKERDPACISFVHRRKVLALLIQNRVSEVFAVDIHPGAKIGWGILLDHATGVVVGETAVIGNNVSILHNVTLGGTGKASGDRHPKIGDGVLIGAGTCILGNIKIGEGAKIGAGSVVLKEIPPRTTAVGNPARLVGGKENPLKLDKIPSFTMDHTSHITEWSDYVI 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4949489 4950330 - Bda025486.1 Bda07g00397 9287

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00397 256 PANTHER SERINE O-ACETYLTRANSFERASE, SERINE ACETYLTRANSFERASE-RELATED 105 256 - -
Bda07g00397 256 PANTHER SERINE O-ACETYLTRANSFERASE, SERINE ACETYLTRANSFERASE-RELATED 6 104 - -
Bda07g00397 256 CDD LbH_SAT 121 221 IPR045304 -
Bda07g00397 256 SMART SATase_N_2_a 13 115 IPR010493 GO:0005737|GO:0006535|GO:0009001
Bda07g00397 256 SUPERFAMILY Trimeric LpxA-like enzymes 9 226 IPR011004 -
Bda07g00397 256 Gene3D serine acetyltransferase, domain 1 2 105 IPR042122 -
Bda07g00397 256 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 183 211 IPR018357 GO:0016740
Bda07g00397 256 Gene3D Hexapeptide repeat proteins 124 244 - -
Bda07g00397 256 PANTHER SERINE ACETYLTRANSFERASE 105 256 - -
Bda07g00397 256 PANTHER SERINE ACETYLTRANSFERASE 6 104 - -
Bda07g00397 256 Pfam Bacterial transferase hexapeptide (six repeats) 174 208 IPR001451 -
Bda07g00397 256 Pfam Hexapeptide repeat of succinyl-transferase 141 157 IPR001451 -
Bda07g00397 256 Pfam Serine acetyltransferase, N-terminal 13 104 IPR010493 GO:0005737|GO:0006535|GO:0009001
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00397 K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] - zju:107403319 405.216
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g00397 Bda09g00422 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00391 Bda-Chr2:44436256 Bda07g00397 Bda-Chr7:4949489 1.97E-114 dispersed
Bda07g00397 Bda-Chr7:4949489 Bda13g00981 Bda-Chr13:11424161 6.93E-65 dispersed
Bda07g00397 Bda-Chr7:4949489 Bda09g00422 Bda-Chr9:5373589 5.54E-157 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g635 Blo03g00516 Blo03g01477 Bda07g00397 Bda09g00422 . Bpe08g01100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g00576 . Bma07g01254 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001381 4 9 3 1 3 1 3 2 2 1 1 1 2 3 2 3 1 6 3 2 2 2 1 2 2 2 2 3 3 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00397 Bda_Chr07 FPKM 5.359529 5.437326 9.186587 9.830653 11.893623 12.958736 12.095108 9.972548 10.623324