Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00398 ATGGCTGTTACTTCAATCTCATCTACTTTGATTCCCTCTTTCTTTATCTCCAACTCTTCCTCCTTCCTTTCTTCTAAGCCGGACCTCTTCTTCCTCTCTTTCTCTTCTACCCCTTCGTCGAAGCTCCGAGCCCTAAAATCCTCATTTCTTTCGACTAAGCTTTATGCCGCATCCGAAGTCGTGGACTCCATCGATACCATAGAACCTGCTCCAGAAATCCTCGATGGTGAAGATTCTGAGGCACCTGGCACTTCATCACTCAGTATTGGAGATGATGCAGATAAGATGGCGCCAAAGCAAAAAATTCGAATTAAACTAAGGTCGTACTGGGTGCCGTTAATTGAGGACTCTTGCAAGCAGATAATGGATGCTGCTAGAAATACCAATGCGAAAACCATGGGTCCTGTACCTTTACCCACCAAAAAACGGATCTATTGTGTCCTCAAATCCCCACACGTGAACAAAGATGCGAGGTTTCATTTTGAAATACGAACCCACCAACGACTCATAGATATTCTTTACCCTACTGCCCAAACAATTGATTCTTTGATGCAGCTCGACCTCCCTGCTGGGGTTGATGTGGAGGTCAAGCTCTGA 597 45.23 MAVTSISSTLIPSFFISNSSSFLSSKPDLFFLSFSSTPSSKLRALKSSFLSTKLYAASEVVDSIDTIEPAPEILDGEDSEAPGTSSLSIGDDADKMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVNKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4955551 4956968 - Bda025487.1 Bda07g00398 9288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00398 198 TIGRFAM rpsJ_bact: ribosomal protein uS10 100 197 IPR001848 GO:0003735|GO:0005840|GO:0006412
Bda07g00398 198 PANTHER BNAC05G40270D PROTEIN 1 198 - -
Bda07g00398 198 ProSitePatterns Ribosomal protein S10 signature. 125 140 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bda07g00398 198 SUPERFAMILY Ribosomal protein S10 101 198 IPR036838 -
Bda07g00398 198 Gene3D Ribosomal protein S10 domain 89 198 IPR036838 -
Bda07g00398 198 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 1 198 IPR001848 GO:0003735|GO:0005840|GO:0006412
Bda07g00398 198 MobiDBLite consensus disorder prediction 71 92 - -
Bda07g00398 198 Pfam Ribosomal protein S10p/S20e 103 197 IPR027486 -
Bda07g00398 198 SMART Ribosomal_S10_2 103 197 IPR027486 -
Bda07g00398 198 Hamap 30S ribosomal protein S10 [rpsJ]. 99 198 IPR001848 GO:0003735|GO:0005840|GO:0006412
Bda07g00398 198 PRINTS Ribosomal protein S10 family signature 101 114 IPR001848 GO:0003735|GO:0005840|GO:0006412
Bda07g00398 198 PRINTS Ribosomal protein S10 family signature 136 151 IPR001848 GO:0003735|GO:0005840|GO:0006412
Bda07g00398 198 PRINTS Ribosomal protein S10 family signature 157 171 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00398 K02946 RP-S10, MRPS10, rpsJ; small subunit ribosomal protein S10 - csv:101213702 293.123
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00398 Bda-Chr7:4955551 Bda13g00961 Bda-Chr13:11247157 5.01E-26 dispersed
Bda07g00398 Bda-Chr7:4955551 Bda04g01154 Bda-Chr4:62302648 4.17E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g636 . . Bda07g00398 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0019 Cone9ag0018 . . . Csa07g01069 . . . . . . Bpe11g00577 . . Bma14g00695 . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01084 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006978 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00398 Bda_Chr07 FPKM 1.391198 1.220232 1.404076 1.133473 2.784383 2.664091 2.570055 0.232113 0.197283