Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00399 ATGTCTGGGAGTGGCCATTGTTTTGTGGAGTGGAAGGAGCATTTTGTCTCACAAGAGCGAGGCAGCAGAGTGGTGCACTATTTTTTGAAGGATTCTAATGGGGTATCCATTCTTGCTGTTGTGGGCACTGAGAGGAGTATTAGACACATGTTCTATGTCGTTGCAGATGAATTTTTACAAGCTTATGGCCCTGAAAGTTCTGTTCATAGTGGTTTTAAATGGAGATCTAGAAGAGAGGTTGTGGATTGGCTAACTTCTATGCTTTCTAAGCAGCATTTAAATGGAGAGCATTCTGAACTGCTGAAATATAATTCTAATCGGTCAGTTGAAACTCTTCTGTTTTCAAAGAAGGGAGTAAGTCATTCACTCGACAATGTCCCTGATGACAAGATATGTCGTGTGAGAGATTGTGATGGACCGGATTCTGACATTGTTTGGTCGGGCACTGCATGGATCTGTGGGAAGCAGCTTAAGCACTACCCTGAATTTTCCAGGAATGGAACTTCAATAGCGATTCAATCGTTCGTCTTTATCATGGCTAAGGGAGATAATCAGTACCTTGCTTACTTGGAAGATATGTATGAAGACAAAAGAGGCCAAAAAAAGGTCAAAGTAAGATGGTTTCACCATAGCCAGGAGGTGAAAGGGGTGATTCCTCTTCGAAATTCGCACCCGAAAGAAGTATTTATGACACCATGTGCACAAACAATCAGTGCTGAGTGCGTTGATGGTCCTGCTGCGATCCTAACTCGAGAACATTATAAAAGATTCCTCGAGGCTTTCCCTCATGCCTTTTCCTGCAGAATCCATTTCTGTTATAGGCAGTTTAGGAGTAATAAATTGAAGCCTTTCAACTTGAGTAAACTGCGTGGCTATGTGAATCAGCCCATTCTCTCTTGTTTGGATCTCAGGGTCATCCAAAAACCGGATTTGGCATGTGATAGTTTAACTGCAGATGAAGATGCGGAGCAAAACCCAGTTGTCTGTAAAAAACTAGGAGCTAAGAGGAGGCGAAGCAGTAAAGGATGCGAGGAGTTTGAATTTGAAAACTCGAGAATTTTTAGCAAATGTCAGAAGATGGTCACAGACGAACAATGCAAAAGCTTTAAGTTTAGGCTATCAAACAGGAGAATGCTTTCTTGCAATCATGTTGAAATTAACAAAAAAATAGAGGTGTTGTGTCAAGATAGCGGAATCCGGGGCTGCTGGTTCAGATGTTCCATCTTGCGTCTATCGGGAAAACTAATTAGAGTTCGATATGATGATTTGGTAGATGAAGATGGTTCTGGCAATCTTGAGGAATGGATCCCAGCTTTTAAAATAGCTTTGCCTGACAAACTTCGCATGAGGCACTCTGGTCGCCCGACCATACGACCGGGCCTCCAAGAACCAACCGAACTAGCTATCGAAATCGGTGTTGCTATTGATGCGTGGTGGAGTGATGGCTGGTGGGAAGGAGTCATTACTGGAATTAACAACTTGGACAACGACCTCATGCATATTTTCTTGCCAGGCGAAAACTTATTCTTGGATATACCAAAAAAGGATCTTAGAGTTTCCAAAGATTGGTTGGGAGATTCCTGGACCGACATTGAAGCAAAGCCTGACATTCTTTTAGCCATATCTTCAATGGTTAGCTCCGACACCAAGCTCGCCATGTCCTCTAATACTGCTGAGGGTGTCAAATCCGGTAGTTTCGATACATCAAATGTCGAATTTGTTCCAACCACGACTAAAAATAGTCACGAAGATGGAAGCAATTCTCACGATAATAGCAAAAACGACAAAGATGACGAAGGCGAGGATAATAACGAGTCTAATATAGAAATAGATGCGTCCGAACTGCCTAGAGAGAACTGTACAGCAGGAGTTACGGAATTGGTAGCTTAA 1890 42.54 MSGSGHCFVEWKEHFVSQERGSRVVHYFLKDSNGVSILAVVGTERSIRHMFYVVADEFLQAYGPESSVHSGFKWRSRREVVDWLTSMLSKQHLNGEHSELLKYNSNRSVETLLFSKKGVSHSLDNVPDDKICRVRDCDGPDSDIVWSGTAWICGKQLKHYPEFSRNGTSIAIQSFVFIMAKGDNQYLAYLEDMYEDKRGQKKVKVRWFHHSQEVKGVIPLRNSHPKEVFMTPCAQTISAECVDGPAAILTREHYKRFLEAFPHAFSCRIHFCYRQFRSNKLKPFNLSKLRGYVNQPILSCLDLRVIQKPDLACDSLTADEDAEQNPVVCKKLGAKRRRSSKGCEEFEFENSRIFSKCQKMVTDEQCKSFKFRLSNRRMLSCNHVEINKKIEVLCQDSGIRGCWFRCSILRLSGKLIRVRYDDLVDEDGSGNLEEWIPAFKIALPDKLRMRHSGRPTIRPGLQEPTELAIEIGVAIDAWWSDGWWEGVITGINNLDNDLMHIFLPGENLFLDIPKKDLRVSKDWLGDSWTDIEAKPDILLAISSMVSSDTKLAMSSNTAEGVKSGSFDTSNVEFVPTTTKNSHEDGSNSHDNSKNDKDDEGEDNNESNIEIDASELPRENCTAGVTELVA 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4963223 4966256 - Bda025488.2 Bda07g00399 9289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00399 629 SMART BAH_4 168 282 IPR001025 GO:0003682
Bda07g00399 629 SMART agenet_At_2 467 525 IPR014002 -
Bda07g00399 629 PANTHER OS07G0607300 PROTEIN 4 604 - -
Bda07g00399 629 MobiDBLite consensus disorder prediction 583 600 - -
Bda07g00399 629 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 4 604 - -
Bda07g00399 629 MobiDBLite consensus disorder prediction 559 582 - -
Bda07g00399 629 ProSiteProfiles BAH domain profile. 168 282 IPR001025 GO:0003682
Bda07g00399 629 Pfam Agenet domain 388 441 IPR008395 -
Bda07g00399 629 MobiDBLite consensus disorder prediction 559 616 - -
Bda07g00399 629 Gene3D - 140 300 IPR043151 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00399 - - - qsu:111986205 737.643
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00037 Bda-Chr1:5141629 Bda07g00399 Bda-Chr7:4963223 2.24E-166 dispersed
Bda01g02081 Bda-Chr1:57022383 Bda07g00399 Bda-Chr7:4963223 4.09E-110 dispersed
Bda06g00021 Bda-Chr6:210689 Bda07g00399 Bda-Chr7:4963223 4.50E-10 dispersed
Bda07g00399 Bda-Chr7:4963223 Bda02g00862 Bda-Chr2:49060245 2.26E-06 dispersed
Bda07g00399 Bda-Chr7:4963223 Bda08g00583 Bda-Chr8:5941616 2.16E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g638 . . Bda07g00399 . . . . . . . Cma01g01084 . Car01g00960 Car09g00907 . . Cpe02g00814 . . . . . . . . . . . . . . Cone6ag0017 Cone9ag0016 . . . . . . . . . . Bpe11g00579 . . Bma14g00175 . Cmo01g01130 Cmo09g00997 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003848 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 1 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00399 Bda_Chr07 FPKM 7.462781 7.477428 7.840956 7.67713 7.311163 6.774535 8.234853 7.656767 8.821156