Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00413 ATGAGAATAGAGCTTGGTGGCGCATTTGCTGACCTCGTAATCCTCCGAATCGGTTTCTATGAGATTCTCAAGCTAGATATGCCCCCATATGCTGTTTTAGATGAGAATGTAAAGCTTGCTAAGGTAGCCCTTAGACCTGGTGCTGGAAACTTGGTCAATGGAATCCTTCGAAAGCTTCTTTTGCTGAAGGAAAAAAACTCTCTTCCTCTACCTAAAGTGGAAGGCGATGATCGAGCAAAAGCACGAGCTCTTGCAACTTTGCATTCCCATCCTGTTTGGATGGTTAGGCGATGGACAAAGTATCATGGGCAAGAAGAAGCTATTAGATTGATGGAGTGGAATAACAGTGAACCGAGTTATAGCTTGAGGGCAAACAGTGGGAATGGTGTTTCAAGAGCTGATCTTATTACAAGACTCAATTTGTTAAAGGTCCCTCATGAGATTTCTTTGCATTTGGATGATTTTGTTCGAATCAAAACTGGATTGCAGGTAATCATACAAGCTGGATTATTTAAAGAAGGGTTGTGTTCAGTGCAAGATGAGAGTGCCGGTCTTGTAGTTTCTGTCTTAAATCCTCAGCCTGGTGAGAGCATTATTGATTGTTGTGCTGCTCCAGGAGGAAAAACACTCTGTATAGCTTCCAAATTAAAAGGCCAAGGTAGTATAATATATGCTATTGACAGCAATAAAGGTCGTTTACGAATCCTTAAAGAGACAGCAGAGATACACAAATTAGATGGGATTATCACTACCATTCACAGTGATCTTCGACAATTTTCTGAAAAACATCCTCTGAAGTGTGATAAAGTTCTGTTGGATGCTCCTTGCTCTGGATTAGGGGTTCTATCCAAGAGAGCTGACCTGCGTTGGAATAGGAAACTAGAGGACATGGAGGAGCTTAAGAATTTACAGGATGAACTTCTTGATGCAGCTTCCATATTAGTAAAGGAGGGTGGAGTTTTGGTCTATAGTACTTGCTCAATAGATCCTGAAGAGAATGAAGGGAGGGTTGCTGCATTTCTTTCAAGGCACCTAGAATTTTCGGTAGATCGTGTTGACAAATACGTACCACATCAATTCACGACAAAGGATGGTTTCTATTTCTCTAATCCGATAAAACATTCACTTGACGGCTCCTTTGCTGCTCGTCTTGTTCGAGGTTTGTGA 1167 41.47 MRIELGGAFADLVILRIGFYEILKLDMPPYAVLDENVKLAKVALRPGAGNLVNGILRKLLLLKEKNSLPLPKVEGDDRAKARALATLHSHPVWMVRRWTKYHGQEEAIRLMEWNNSEPSYSLRANSGNGVSRADLITRLNLLKVPHEISLHLDDFVRIKTGLQVIIQAGLFKEGLCSVQDESAGLVVSVLNPQPGESIIDCCAAPGGKTLCIASKLKGQGSIIYAIDSNKGRLRILKETAEIHKLDGIITTIHSDLRQFSEKHPLKCDKVLLDAPCSGLGVLSKRADLRWNRKLEDMEELKNLQDELLDAASILVKEGGVLVYSTCSIDPEENEGRVAAFLSRHLEFSVDRVDKYVPHQFTTKDGFYFSNPIKHSLDGSFAARLVRGL 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5296630 5301104 - Bda025505.1 Bda07g00413 9303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00413 388 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 13 387 IPR023267 GO:0001510
Bda07g00413 388 PRINTS Viridiplantae FMU-related RCMT signature 67 80 IPR023268 -
Bda07g00413 388 PRINTS Viridiplantae FMU-related RCMT signature 345 357 IPR023268 -
Bda07g00413 388 Pfam 16S rRNA methyltransferase RsmB/F 188 384 IPR001678 GO:0008168
Bda07g00413 388 SUPERFAMILY NusB-like 10 94 IPR035926 -
Bda07g00413 388 Pfam NusB family 11 59 IPR006027 GO:0003723|GO:0006355
Bda07g00413 388 PANTHER NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN 13 387 - -
Bda07g00413 388 CDD AdoMet_MTases 198 324 - -
Bda07g00413 388 Gene3D - 8 72 IPR035926 -
Bda07g00413 388 Gene3D Vaccinia Virus protein VP39 184 387 IPR029063 -
Bda07g00413 388 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 110 387 IPR001678 GO:0008168
Bda07g00413 388 PRINTS RNA (C5-cytosine) methyltransferase signature 170 184 IPR023267 GO:0001510
Bda07g00413 388 PRINTS RNA (C5-cytosine) methyltransferase signature 369 386 IPR023267 GO:0001510
Bda07g00413 388 PRINTS RNA (C5-cytosine) methyltransferase signature 199 209 IPR023267 GO:0001510
Bda07g00413 388 PRINTS RNA (C5-cytosine) methyltransferase signature 268 280 IPR023267 GO:0001510
Bda07g00413 388 PRINTS RNA (C5-cytosine) methyltransferase signature 318 334 IPR023267 GO:0001510
Bda07g00413 388 Coils Coil 297 317 - -
Bda07g00413 388 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 82 386 IPR029063 -
Bda07g00413 388 Gene3D Sun protein; domain 3 77 183 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00413 K03500 rsmB, sun; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] - jre:108994543 600.127
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00413 Bda-Chr7:5296630 Bda07g00417 Bda-Chr7:5324550 4.38E-26 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g678 Blo03g00505 . Bda07g00413 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0007 . . . . Csa07g00858 . . . . . . Bpe11g00590 . . Bma14g00679 . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01039 Cme01g01121
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016633 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 6
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00413 Bda_Chr07 FPKM 1.213169 1.978955 0.0 0.0 5.602914 6.069915 6.274241 0.0 0.0