Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00417 ATGGCTGGTACTGTAGTCAATAGGAAAAAAGTTGCAAAATTAAAGAAACCACCGGCAAAGAAGAAGCAAAAGCATGATCTTTTCAGTTCAAAAGATCCCAAAGTAGAGGACACTCCTCATGACCAAACTGGAGAGGTTAATAGCAATGGAGAATACTCAGATTCTGGAGTGGATTTTTCTTCTGATGAAGATCCCTTAGCTGATGATTTTCTCGGAATAAGTGAGGATGAGGGTTCAGAGTCAGATTCTGGTTCAGATTCAGATGGATTTAATATCGAGCAGTCGTCAAAAGCTATAGATGACCAAAAGGCTAAAGAACTAGAAGAAGCGGGGGCTGAAATGACGCTCAACATTAATCAAGAATCTGATGAATTTAGATTGCCAACTCGTCAGGAACTTGAAGAAGAGGAACTTAGGCCCCCCGATCTTGCAAATATTCAAAGACGGATACGAGAGATTGCTCGAGTCCTCACAAATTTTAAGGCTTTGAGGCAAAATGGTGTCACGAGGAAGGACTACATCGAGCAAATTAAGAAGGATATGTGTTCATATTATGGTTACAATGATTTTCTAATAGGAGTGTTGGTAGAGATGTTTCCTGTTGCTGAACTTTTGGAGATCATGGAAGCATTTGAGAAGCCAAGGCCAATATGTTTAAGAACAAACACTCTAAAGACCCGAAGGCGTGACTTGGCAGATGTGCTGATAAATAGAGGAGTAAACTTGGCGCCTTTGAGCAAGTGGTCTAAAGTAGGGCTGGTAGTTTATGATTCACAAGTGGCAATTGGAGCCACTCCTGAATATATGGCTGGTTTTTATATGCTTCAAAGCGCAAGCTCATTTCTGCCTGTGATGGCCCTTGCTCCAAAAGAGAAGGAACGGATAGTTGATATGGCGGCTGCACCAGGTGGCAAAACAACATATATTGCTGCTCTCATGAAAAATAGTGGAATAATTTTTGCAAATGAGTTTAAAGCTAAGAGGTTAAAGTCACTCACTGCAAATTTACATCGAATGGGGGTTACAAATACCATTGTTTGTAATTATGATGGAAAGGAGCTTCCAAAGGTTTTGGGTATTCACACAGCTGATCGGGTCTTGTTGGATGCCCCATGTAGCGGATCTGGAGTCATCTCTAAAGACGAGTCTGTCAAAACCTCTAAAAGTTTAGAAGATATTGAAAAATCTGCTTTTTTGCAGAAGGAACTTATACTTGCGGCAATAGATATGGTTGATGCCAATTCAAAAACTGGGGGTTATGTAGTTTATTCGACCTGCTCCATTATGGTGGCTGAGAATGAAGCAGTTGTAGACTATGCACTGAAGAAGAGGGATGTTGAGCTTGTGCCATGTGGTCTTGACTTTGGGCGTCCAGGGTTTATCCGTTATAGAGAAAAACGGTTTCACCCATCTTTAGAGAAGACTAGACGTTTCTACCCTCATGTACACAATATGGATGGCTTTTTTGTTGCAAAGTTGAAAAAGAAGAGCAACTTAAAGCAATCTGCAGCTGCTTTGGAAGAATCAAAGCTGGACGAACATGTTGATTCTGAAGAAAATGGAGATGAAAAGGCTGCGGAGGATCCTCAACACGTGACACAAGAAGGCACTAAAAGTAAAAAGGATGCAACGAGCGGAATCCTTGAAAACGGCAAGCCAGAATCCCAACCTTCTTTTAAAAAGAAGAAAAAACGGAAATTCCCGTCAGAGGTGGCAAAGAAAGTAGAGCTTGAAGAAAGTGGAGATAGGAATGCTAGTGAGAATTTTCAACATCATGTTATACAAAAAGGCAGTAAAAGAAGAAAAAAGGAAGTAAAGAACAGAGAAGCTAAAAATGGCAAAGCAGAAGGATCCCAACATCCTTTCAAAAAGAAGGAAAAACGTAAATTCCCATCGAAAGCAGAAATCTCTAAAACCAGGGAAGAGAAGAGAAAAGCTATGAGGGAAAAGAAAATAAGCAAGAAGGAAAGAAGATAA 1977 40.41 MAGTVVNRKKVAKLKKPPAKKKQKHDLFSSKDPKVEDTPHDQTGEVNSNGEYSDSGVDFSSDEDPLADDFLGISEDEGSESDSGSDSDGFNIEQSSKAIDDQKAKELEEAGAEMTLNINQESDEFRLPTRQELEEEELRPPDLANIQRRIREIARVLTNFKALRQNGVTRKDYIEQIKKDMCSYYGYNDFLIGVLVEMFPVAELLEIMEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLAPLSKWSKVGLVVYDSQVAIGATPEYMAGFYMLQSASSFLPVMALAPKEKERIVDMAAAPGGKTTYIAALMKNSGIIFANEFKAKRLKSLTANLHRMGVTNTIVCNYDGKELPKVLGIHTADRVLLDAPCSGSGVISKDESVKTSKSLEDIEKSAFLQKELILAAIDMVDANSKTGGYVVYSTCSIMVAENEAVVDYALKKRDVELVPCGLDFGRPGFIRYREKRFHPSLEKTRRFYPHVHNMDGFFVAKLKKKSNLKQSAAALEESKLDEHVDSEENGDEKAAEDPQHVTQEGTKSKKDATSGILENGKPESQPSFKKKKKRKFPSEVAKKVELEESGDRNASENFQHHVIQKGSKRRKKEVKNREAKNGKAEGSQHPFKKKEKRKFPSKAEISKTREEKRKAMREKKISKKERR 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5324550 5329337 - Bda025510.1 Bda07g00417 9307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00417 658 MobiDBLite consensus disorder prediction 1 104 - -
Bda07g00417 658 MobiDBLite consensus disorder prediction 23 41 - -
Bda07g00417 658 Coils Coil 636 656 - -
Bda07g00417 658 MobiDBLite consensus disorder prediction 608 649 - -
Bda07g00417 658 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 203 280 IPR031341 -
Bda07g00417 658 MobiDBLite consensus disorder prediction 569 586 - -
Bda07g00417 658 Gene3D Sun protein; domain 3 173 278 - -
Bda07g00417 658 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 226 239 IPR023273 GO:0008168
Bda07g00417 658 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 203 215 IPR023273 GO:0008168
Bda07g00417 658 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 170 190 IPR023273 GO:0008168
Bda07g00417 658 Pfam 16S rRNA methyltransferase RsmB/F 284 494 IPR001678 GO:0008168
Bda07g00417 658 PRINTS RNA (C5-cytosine) methyltransferase signature 267 281 IPR023267 GO:0001510
Bda07g00417 658 PRINTS RNA (C5-cytosine) methyltransferase signature 296 306 IPR023267 GO:0001510
Bda07g00417 658 PRINTS RNA (C5-cytosine) methyltransferase signature 418 434 IPR023267 GO:0001510
Bda07g00417 658 PRINTS RNA (C5-cytosine) methyltransferase signature 364 376 IPR023267 GO:0001510
Bda07g00417 658 PRINTS RNA (C5-cytosine) methyltransferase signature 478 495 IPR023267 GO:0001510
Bda07g00417 658 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 219 495 IPR011023 GO:0003723|GO:0006396|GO:0008757
Bda07g00417 658 Gene3D Vaccinia Virus protein VP39 279 503 IPR029063 -
Bda07g00417 658 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 179 496 IPR029063 -
Bda07g00417 658 MobiDBLite consensus disorder prediction 506 538 - -
Bda07g00417 658 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 207 496 IPR001678 GO:0008168
Bda07g00417 658 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 12 570 IPR023267 GO:0001510
Bda07g00417 658 Coils Coil 104 124 - -
Bda07g00417 658 MobiDBLite consensus disorder prediction 504 658 - -
Bda07g00417 658 MobiDBLite consensus disorder prediction 57 83 - -
Bda07g00417 658 MobiDBLite consensus disorder prediction 42 56 - -
Bda07g00417 658 PANTHER BNACNNG49010D PROTEIN 12 570 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00417 K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310] - egr:104438243 764.222
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00417 Bda-Chr7:5324550 Bda10g00189 Bda-Chr10:6580434 1.12E-06 dispersed
Bda07g00413 Bda-Chr7:5296630 Bda07g00417 Bda-Chr7:5324550 4.38E-26 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g696 . . Bda07g00417 . . . . . . . . . Car01g00943 . Sed04g3639 . . Bhi09g01791 Tan01g3207 Cmetu01g1798 . . Mch11g1292 . . . . . . . . . . . . . . . . . . . . Bpe11g00594 . . . . . . . . . . . . . . . . . . . Cla09g02088 Cam09g2175 Cec09g2241 . . . . . . Chy01g01130 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004303 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 3 4 0 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00417 Bda_Chr07 FPKM 27.02602 26.805313 23.63883 22.065842 25.263708 27.993082 25.228472 36.274963 36.66988