Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00422 ATGAATTCTCCTGCCACTGGAATCCAAATCCGGCATCCTTATTCCGTTTCTTCGTTCTGGGTTAGAATGGCAACCAGAATGTCTAGAGCTAGATGGTTCATTTTCTTAAGAAAAGTATTTCACTACCAGAACAGTTCGAGATCCGATCTGGGTTCTAATCCTTTAAATTCCAGCACCTGGATGATGATGGAGCTTATTGCTTTGGTAGCTCAGATAAGTTTGATAGTATTTACTCTGCATATATCTAAGAGCGAGAAGCCAGTTTGGCCTATGAGACTGTGGATTGCTGGTTATGGTATTGGTTGCTTCCTCAGTTTGCTCTTGCTCTTCGGTCGATATCGGCTTCTTTGTCTGAATCTTTCTGATGTGGAGCAGCAGAACAGAGAGAGTGAAGAATCAAGGACCTCGCATTTGAGAAACAAATGCCAGACATCTCTCGAGCTTTTCTTCGCAATATGGTTTGTCATCGGCAATGTTTGGATCTTCGACTCTCGCTTTGGTTCCTACGACCAAGCCACAAAGCTCCACTTCCTCTGCATATCACTCTTATCATGGAACGCCATTTGCTACTCCTTTCCGCTCCTCCTTTTCCTTCTGCTCTGCTGCTTTGTGCCGTTGGTCAGCCGCTATTTAGGCTACAACATGAACGTGGGTTCGGCCAATCGAGGAGCCTCCGACGAACAGCTATCTCAGCTGCCTAGCTGGAAATATAAACCGGTTAAAGTCGATTTAGAGCTCGAAACGGACTTGGAAAGCGATTCCGCCCTAGCAACCAAAGAAGATCCGGAATGCTGTATTTGTCTTGCAAAGTATACGGAGAGGGAGAAAGTGAGGGAGTTGCCTTGCTCACATATGTTTCATCTCAAGTGTGTTGATCAATGGCTGAGAATCATCCCCTGTTGCCCACTTTGCAAACAAGAGCTAGACAGTAGTACGTGA 939 45.47 MNSPATGIQIRHPYSVSSFWVRMATRMSRARWFIFLRKVFHYQNSSRSDLGSNPLNSSTWMMMELIALVAQISLIVFTLHISKSEKPVWPMRLWIAGYGIGCFLSLLLLFGRYRLLCLNLSDVEQQNRESEESRTSHLRNKCQTSLELFFAIWFVIGNVWIFDSRFGSYDQATKLHFLCISLLSWNAICYSFPLLLFLLLCCFVPLVSRYLGYNMNVGSANRGASDEQLSQLPSWKYKPVKVDLELETDLESDSALATKEDPECCICLAKYTEREKVRELPCSHMFHLKCVDQWLRIIPCCPLCKQELDSST 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5413694 5415324 + Bda025517.1 Bda07g00422 9312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00422 312 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 14 309 - -
Bda07g00422 312 SMART ring_2 264 304 IPR001841 -
Bda07g00422 312 Pfam Ring finger domain 263 305 IPR001841 -
Bda07g00422 312 ProSiteProfiles Zinc finger RING-type profile. 264 305 IPR001841 -
Bda07g00422 312 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 14 309 - -
Bda07g00422 312 SUPERFAMILY RING/U-box 263 309 - -
Bda07g00422 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 311 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda07g00422 Bda12g00980 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00422 Bda-Chr7:5413694 Bda13g01283 Bda-Chr13:35146003 2.99E-51 dispersed
Bda12g00980 Bda-Chr12:40942561 Bda07g00422 Bda-Chr7:5413694 6.48E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00422 - - twl:119986263 438.343